Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_G24
(379 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin bin... 75 4e-14
sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Bar... 75 4e-14
sp|P50886|RL22_XENLA 60S ribosomal protein L22 75 5e-14
sp|P47198|RL22_RAT 60S ribosomal protein L22 73 2e-13
sp|P52865|RL22_GADMO 60S ribosomal protein L22 72 4e-13
sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development... 70 2e-12
sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3 67 1e-11
sp|P50887|RL22_DROME 60S ribosomal protein L22 67 1e-11
sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2 67 2e-11
sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1 56 2e-08
>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin binding protein HBp15)
sp|P67985|RL22_PIG 60S ribosomal protein L22 (Heparin binding protein HBp15)
Length = 128
Score = 75.5 bits (184), Expect = 4e-14
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +3
Query: 3 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 179
K KK+V FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV
Sbjct: 13 KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV 72
Query: 180 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 308
+ VP + LRD+LRVVA KESYELRYF
Sbjct: 73 TSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated
protein) (EBER associated protein) (EAP) (Heparin
binding protein HBp15)
Length = 128
Score = 75.5 bits (184), Expect = 4e-14
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +3
Query: 3 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 179
K KK+V FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV
Sbjct: 13 KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV 72
Query: 180 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 308
+ VP + LRD+LRVVA KESYELRYF
Sbjct: 73 TSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P50886|RL22_XENLA 60S ribosomal protein L22
Length = 128
Score = 75.1 bits (183), Expect = 5e-14
Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Frame = +3
Query: 3 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 179
K KK++ FTLDCT+PVEDGI+D + F Q+ G +++++ K ITV
Sbjct: 13 KKKKQLLKFTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITV 72
Query: 180 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 308
+ VP + LRD+LRVVA KESYELRYF
Sbjct: 73 SSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P47198|RL22_RAT 60S ribosomal protein L22
Length = 128
Score = 73.2 bits (178), Expect = 2e-13
Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = +3
Query: 3 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 179
K KK+V FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV
Sbjct: 13 KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV 72
Query: 180 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 308
+ P + LRD+LRVVA KESYELRYF
Sbjct: 73 TSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P52865|RL22_GADMO 60S ribosomal protein L22
Length = 125
Score = 72.0 bits (175), Expect = 4e-13
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Frame = +3
Query: 3 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 179
K KK++ FTLDCT+PVEDGI+D + F Q+ G+ +++++ I+V
Sbjct: 10 KKKKQILKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERXXSKISV 69
Query: 180 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 308
+ VP + LRD+LRVVA KESYELRYF
Sbjct: 70 NSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYF 112
>sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development-specific protein 217)
Length = 130
Score = 69.7 bits (169), Expect = 2e-12
Identities = 38/102 (37%), Positives = 53/102 (51%)
Frame = +3
Query: 3 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQ 182
K KK+ FT+DCT PVEDGI+D S F Q+ ++ +++ K +TV
Sbjct: 17 KKKKQTLKFTIDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIERKKSKVTVT 76
Query: 183 ANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 308
+ + + LRD+LRVVA +KESYELRYF
Sbjct: 77 SEIAFSKRYLKYLTKKYLKKNNLRDWLRVVAANKESYELRYF 118
>sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3
Length = 124
Score = 67.0 bits (162), Expect = 1e-11
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Frame = +3
Query: 3 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQ 182
K KKK +FT+DC+ PV+D I++I+ ++ GDS+++ ++K ITV
Sbjct: 10 KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVT 69
Query: 183 ANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 311
A+ H +RD+LRV+A KD+ YELRYFN
Sbjct: 70 ADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|P50887|RL22_DROME 60S ribosomal protein L22
Length = 299
Score = 67.0 bits (162), Expect = 1e-11
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Frame = +3
Query: 9 KKKVST-FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQA 185
KKKVS FT+DCTN ED I+D++ F +Y G+++ ++ K + V +
Sbjct: 186 KKKVSLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSS 245
Query: 186 NVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 308
+V ++LRD++RVVA +K+SYELRYF
Sbjct: 246 DVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYF 286
>sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2
Length = 124
Score = 66.6 bits (161), Expect = 2e-11
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Frame = +3
Query: 3 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQ 182
K KKK +FT+DC+ PV+D I++I+ ++ GDS+ + ++K ITV
Sbjct: 10 KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVT 69
Query: 183 ANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 311
A+ H +RD+LRV+A KD+ YELRYFN
Sbjct: 70 ADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1
Length = 127
Score = 56.2 bits (134), Expect = 2e-08
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +3
Query: 9 KKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQAN 188
KKK +F +DC+ PV+D IL+I+ ++ G+S+++ + I V AN
Sbjct: 14 KKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNAN 73
Query: 189 VPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYF 308
+ LRD+LRV+A KDK YE+RYF
Sbjct: 74 SNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,479,579
Number of Sequences: 369166
Number of extensions: 386230
Number of successful extensions: 647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)