Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_P23
(363 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50886|RL22_XENLA 60S ribosomal protein L22 70 2e-12
sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin bin... 70 2e-12
sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Bar... 70 2e-12
sp|P47198|RL22_RAT 60S ribosomal protein L22 67 1e-11
sp|P52865|RL22_GADMO 60S ribosomal protein L22 66 2e-11
sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development... 65 5e-11
sp|P50887|RL22_DROME 60S ribosomal protein L22 63 2e-10
sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3 62 4e-10
sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2 62 5e-10
sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1 52 3e-07
>sp|P50886|RL22_XENLA 60S ribosomal protein L22
Length = 128
Score = 70.1 bits (170), Expect = 2e-12
Identities = 39/95 (41%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +2
Query: 11 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITVQANVPXXX 187
FTLDCT+PVEDGI+D + F Q+ G +++++ K ITV + VP
Sbjct: 21 FTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITVSSEVPFSK 80
Query: 188 XXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 292
+ LRD+LRVVA KESYELRYF
Sbjct: 81 RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin binding protein HBp15)
sp|P67985|RL22_PIG 60S ribosomal protein L22 (Heparin binding protein HBp15)
Length = 128
Score = 69.7 bits (169), Expect = 2e-12
Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +2
Query: 2 VSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITVQANVP 178
V FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV + VP
Sbjct: 18 VLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVP 77
Query: 179 XXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 292
+ LRD+LRVVA KESYELRYF
Sbjct: 78 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated
protein) (EBER associated protein) (EAP) (Heparin
binding protein HBp15)
Length = 128
Score = 69.7 bits (169), Expect = 2e-12
Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +2
Query: 2 VSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITVQANVP 178
V FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV + VP
Sbjct: 18 VLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVP 77
Query: 179 XXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 292
+ LRD+LRVVA KESYELRYF
Sbjct: 78 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P47198|RL22_RAT 60S ribosomal protein L22
Length = 128
Score = 67.4 bits (163), Expect = 1e-11
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +2
Query: 2 VSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITVQANVP 178
V FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV + P
Sbjct: 18 VLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEEP 77
Query: 179 XXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 292
+ LRD+LRVVA KESYELRYF
Sbjct: 78 FSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P52865|RL22_GADMO 60S ribosomal protein L22
Length = 125
Score = 66.2 bits (160), Expect = 2e-11
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +2
Query: 11 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITVQANVPXXX 187
FTLDCT+PVEDGI+D + F Q+ G+ +++++ I+V + VP
Sbjct: 18 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERXXSKISVNSEVPFSK 77
Query: 188 XXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 292
+ LRD+LRVVA KESYELRYF
Sbjct: 78 RYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYF 112
>sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development-specific protein 217)
Length = 130
Score = 65.1 bits (157), Expect = 5e-11
Identities = 35/94 (37%), Positives = 49/94 (52%)
Frame = +2
Query: 11 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXXX 190
FT+DCT PVEDGI+D S F Q+ ++ +++ K +TV + +
Sbjct: 25 FTIDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIERKKSKVTVTSEIAFSKR 84
Query: 191 XXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 292
+ LRD+LRVVA +KESYELRYF
Sbjct: 85 YLKYLTKKYLKKNNLRDWLRVVAANKESYELRYF 118
>sp|P50887|RL22_DROME 60S ribosomal protein L22
Length = 299
Score = 63.2 bits (152), Expect = 2e-10
Identities = 31/94 (32%), Positives = 50/94 (53%)
Frame = +2
Query: 11 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXXX 190
FT+DCTN ED I+D++ F +Y G+++ ++ K + V ++V
Sbjct: 193 FTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFSKA 252
Query: 191 XXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 292
++LRD++RVVA +K+SYELRYF
Sbjct: 253 YLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYF 286
>sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3
Length = 124
Score = 62.0 bits (149), Expect = 4e-10
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +2
Query: 8 TFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXX 187
+FT+DC+ PV+D I++I+ ++ GDS+++ ++K ITV A+
Sbjct: 17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSK 76
Query: 188 XXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 295
H +RD+LRV+A KD+ YELRYFN
Sbjct: 77 RYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2
Length = 124
Score = 61.6 bits (148), Expect = 5e-10
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Frame = +2
Query: 8 TFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXX 187
+FT+DC+ PV+D I++I+ ++ GDS+ + ++K ITV A+
Sbjct: 17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSK 76
Query: 188 XXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 295
H +RD+LRV+A KD+ YELRYFN
Sbjct: 77 RYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1
Length = 127
Score = 52.4 bits (124), Expect = 3e-07
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +2
Query: 8 TFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXX 187
+F +DC+ PV+D IL+I+ ++ G+S+++ + I V AN
Sbjct: 19 SFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFSK 78
Query: 188 XXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYF 292
+ LRD+LRV+A KDK YE+RYF
Sbjct: 79 RYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,211,521
Number of Sequences: 369166
Number of extensions: 343562
Number of successful extensions: 558
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)