Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_L07
(397 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50886|RL22_XENLA 60S ribosomal protein L22 77 2e-14
sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin bin... 75 4e-14
sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Bar... 75 4e-14
sp|P47198|RL22_RAT 60S ribosomal protein L22 73 2e-13
sp|P52865|RL22_GADMO 60S ribosomal protein L22 72 3e-13
sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development... 72 4e-13
sp|P50887|RL22_DROME 60S ribosomal protein L22 69 3e-12
sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3 67 1e-11
sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2 67 1e-11
sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1 56 2e-08
>sp|P50886|RL22_XENLA 60S ribosomal protein L22
Length = 128
Score = 76.6 bits (187), Expect = 2e-14
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Frame = +3
Query: 18 SKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVIT 194
SK KK++ FTLDCT+PVEDGI+D + F Q+ G +++++ K IT
Sbjct: 12 SKKKKQLLKFTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKIT 71
Query: 195 VQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
V + VP + LRD+LRVVA KESYELRYF
Sbjct: 72 VSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin binding protein HBp15)
sp|P67985|RL22_PIG 60S ribosomal protein L22 (Heparin binding protein HBp15)
Length = 128
Score = 75.5 bits (184), Expect = 4e-14
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +3
Query: 21 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 197
K KK+V FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV
Sbjct: 13 KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV 72
Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
+ VP + LRD+LRVVA KESYELRYF
Sbjct: 73 TSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated
protein) (EBER associated protein) (EAP) (Heparin
binding protein HBp15)
Length = 128
Score = 75.5 bits (184), Expect = 4e-14
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +3
Query: 21 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 197
K KK+V FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV
Sbjct: 13 KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV 72
Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
+ VP + LRD+LRVVA KESYELRYF
Sbjct: 73 TSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P47198|RL22_RAT 60S ribosomal protein L22
Length = 128
Score = 73.2 bits (178), Expect = 2e-13
Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = +3
Query: 21 KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 197
K KK+V FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV
Sbjct: 13 KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV 72
Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
+ P + LRD+LRVVA KESYELRYF
Sbjct: 73 TSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P52865|RL22_GADMO 60S ribosomal protein L22
Length = 125
Score = 72.4 bits (176), Expect = 3e-13
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Frame = +3
Query: 9 EEKSKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKY 185
++ K KK++ FTLDCT+PVEDGI+D + F Q+ G+ +++++
Sbjct: 6 KQGGKKKKQILKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERXXS 65
Query: 186 VITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
I+V + VP + LRD+LRVVA KESYELRYF
Sbjct: 66 KISVNSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYF 112
>sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development-specific protein 217)
Length = 130
Score = 72.0 bits (175), Expect = 4e-13
Identities = 40/108 (37%), Positives = 55/108 (50%)
Frame = +3
Query: 3 RHEEKSKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDK 182
R K K KK+ FT+DCT PVEDGI+D S F Q+ ++ +++ K
Sbjct: 11 RPSGKGKKKKQTLKFTIDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIERKK 70
Query: 183 YVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
+TV + + + LRD+LRVVA +KESYELRYF
Sbjct: 71 SKVTVTSEIAFSKRYLKYLTKKYLKKNNLRDWLRVVAANKESYELRYF 118
>sp|P50887|RL22_DROME 60S ribosomal protein L22
Length = 299
Score = 68.9 bits (167), Expect = 3e-12
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +3
Query: 15 KSKPKKKVST-FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVI 191
K + KKKVS FT+DCTN ED I+D++ F +Y G+++ ++ K +
Sbjct: 182 KGQKKKKVSLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKL 241
Query: 192 TVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
V ++V ++LRD++RVVA +K+SYELRYF
Sbjct: 242 IVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYF 286
>sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3
Length = 124
Score = 67.4 bits (163), Expect = 1e-11
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = +3
Query: 18 SKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITV 197
+K KKK +FT+DC+ PV+D I++I+ ++ GDS+++ ++K ITV
Sbjct: 9 AKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITV 68
Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 329
A+ H +RD+LRV+A KD+ YELRYFN
Sbjct: 69 TADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2
Length = 124
Score = 67.0 bits (162), Expect = 1e-11
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Frame = +3
Query: 18 SKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITV 197
+K KKK +FT+DC+ PV+D I++I+ ++ GDS+ + ++K ITV
Sbjct: 9 AKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITV 68
Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 329
A+ H +RD+LRV+A KD+ YELRYFN
Sbjct: 69 TADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1
Length = 127
Score = 56.2 bits (134), Expect = 2e-08
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Frame = +3
Query: 27 KKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQAN 206
KKK +F +DC+ PV+D IL+I+ ++ G+S+++ + I V AN
Sbjct: 14 KKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNAN 73
Query: 207 VPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYF 326
+ LRD+LRV+A KDK YE+RYF
Sbjct: 74 SNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,918,403
Number of Sequences: 369166
Number of extensions: 438311
Number of successful extensions: 784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)