Planarian EST Database

DrC_00803

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00803 AGAGATTCTATGTATTTATTTTATTCTTAATTTCAAAAACACAAATTTTCTGTTATAATA TTTAATTAGTCTTATAACGAAGATTAATCAAATCGCCAAACCAAATACGCTGACGATGCA ATACATAGATTTTTTCTCCCTTTTCACAGTGCAACTACCATCAGTTGAATTATCCCAATA ACATGAGCTTGCTGTGTGCAATCCTGCACCATTCTTTTGCATAATAACGCAAGAAACTAT GTATTTAAATGGCTTATTAAGTTTAGTTAACTGGTTAAGAGACTGTTCAATAATTGTAGA AGTCCACTGATTAACCTTATTATGAACATAAGTGCTTGTTCCCGAAATCTATATAAATCT TATATGATGCAGATTTTTGTGAAGACCCTCACGGGTAAAACAATAACTTTAGAGGTTGAA TCTTCCGATACTATTGAAAATGTTAAGGCTAAGATTCAAGATAAAGAAGGTATTCCTCCA GATCAACAACGTCTTATCTTTGCTGGAAAGCAATTAGAAGATGGCAGAACCTTATCTGAT TATAATATTCAAAAGGAAAGCACTCTTCATTTGGTTCTTAGACTCAGAGGTGGTGGAAAA AAACGTAAGAAGAAGAATTATACTACCCCAAAGAAAATCAAACATAAGAAGAAGAAGGTC AAGTTGTCAGTTCTTAAATATTACAAGGTTGACTCAAATGGTAAGATTCAAAGATTGAGA AAGGAATGCCCCAATGAAAGTTGTGGACCAGGAGTCTTCATGGCTGCCCATTTCGACCGA CAATACTGTGGAAAGTGCTGTTTGACTTACATGCATTCAAATAAAACCGAATAATATTTT TAAATAAATCTTCTGGATTATTTTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00803
         (865 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P63172|DYLX_HUMAN  Cytoplasmic dynein light chain (T-comp...   143   7e-34
sp|Q9Z336|DYLX_RAT  Cytoplasmic dynein light chain (T-comple...   143   7e-34
sp|P51807|DYLX_MOUSE  Cytoplasmic dynein light chain (T-comp...   140   6e-33
sp|Q94524|DYLX_DROME  Cytoplasmic dynein light chain (TCTEX-...   128   2e-29
sp|P14792|UBIQ_CAEEL  Ubiquitin >gi|30580944|sp|P59669|UBIQ_...   127   3e-29
sp|P19848|UBIQ_COPCO  Ubiquitin                                   127   3e-29
sp|P14624|UBIQ_CHLRE  Ubiquitin                                   127   3e-29
sp|P42740|UBIQ_AGLNE  Ubiquitin                                   127   4e-29
sp|P62990|UBIQ_BOVIN  Ubiquitin >gi|51703334|sp|P62972|UBIQ_...   127   5e-29
sp|O46543|UBIQ_SHEEP  Ubiquitin                                   127   5e-29

>sp|P63172|DYLX_HUMAN Cytoplasmic dynein light chain (T-complex testis-specific protein 1
           homolog) (Protein CW-1)
 sp|P63171|DYLX_BOVIN Cytoplasmic dynein light chain (T-complex testis-specific protein 1
           homolog)
          Length = 113

 Score =  143 bits (360), Expect = 7e-34
 Identities = 63/84 (75%), Positives = 76/84 (90%)
 Frame = -2

Query: 342 GTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDNST 163
           G + Y H+KVNQWT+ ++EQ+L+QLTKL KPFKYIV+CVIMQKNGAGLHTASSC+WD+ST
Sbjct: 30  GGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSST 89

Query: 162 DGSCTVKREKKSMYCIVSVFGLAI 91
           DGSCTV+ E K+MYCIVS FGL+I
Sbjct: 90  DGSCTVRWENKTMYCIVSAFGLSI 113

>sp|Q9Z336|DYLX_RAT Cytoplasmic dynein light chain (T-complex testis-specific protein 1
           homolog)
          Length = 113

 Score =  143 bits (360), Expect = 7e-34
 Identities = 63/84 (75%), Positives = 76/84 (90%)
 Frame = -2

Query: 342 GTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDNST 163
           G + Y H+KVNQWT+ ++EQ+L+QLTKL KPFKYIV+CVIMQKNGAGLHTASSC+WD+ST
Sbjct: 30  GGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSST 89

Query: 162 DGSCTVKREKKSMYCIVSVFGLAI 91
           DGSCTV+ E K+MYCIVS FGL+I
Sbjct: 90  DGSCTVRWENKTMYCIVSAFGLSI 113

>sp|P51807|DYLX_MOUSE Cytoplasmic dynein light chain (T-complex testis-specific protein
           1) (TCTEX-1)
          Length = 113

 Score =  140 bits (352), Expect = 6e-33
 Identities = 61/84 (72%), Positives = 76/84 (90%)
 Frame = -2

Query: 342 GTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDNST 163
           G + Y H+KVNQWT+ ++EQ+L+QLTKL +PFKYIV+CVIMQKNGAGLH+ASSC+WD+ST
Sbjct: 30  GGNAYQHSKVNQWTTNVLEQTLSQLTKLGRPFKYIVTCVIMQKNGAGLHSASSCFWDSST 89

Query: 162 DGSCTVKREKKSMYCIVSVFGLAI 91
           DGSCTV+ E K+MYCIVS FGL+I
Sbjct: 90  DGSCTVRWENKTMYCIVSTFGLSI 113

>sp|Q94524|DYLX_DROME Cytoplasmic dynein light chain (TCTEX-1 protein homolog)
          Length = 111

 Score =  128 bits (322), Expect = 2e-29
 Identities = 57/84 (67%), Positives = 68/84 (80%)
 Frame = -2

Query: 342 GTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDNST 163
           G + Y H+KVN WT  ++E  L  LTK  KP+KYIV+ +IMQKNGAGLHTASSCYW+N T
Sbjct: 28  GGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGLHTASSCYWNNDT 87

Query: 162 DGSCTVKREKKSMYCIVSVFGLAI 91
           DGSCTV+ E K+MYCIVSVFGLA+
Sbjct: 88  DGSCTVRWENKTMYCIVSVFGLAV 111

>sp|P14792|UBIQ_CAEEL Ubiquitin
 sp|P59669|UBIQ_GEOCY Ubiquitin
          Length = 76

 Score =  127 bits (320), Expect = 3e-29
 Identities = 64/65 (98%), Positives = 65/65 (100%)
 Frame = +1

Query: 367 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 546
           MQIFVKTLTGKTITLEVE+SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 547 IQKES 561
           IQKES
Sbjct: 61  IQKES 65

>sp|P19848|UBIQ_COPCO Ubiquitin
          Length = 76

 Score =  127 bits (320), Expect = 3e-29
 Identities = 64/65 (98%), Positives = 65/65 (100%)
 Frame = +1

Query: 367 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 546
           MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 547 IQKES 561
           IQKES
Sbjct: 61  IQKES 65

>sp|P14624|UBIQ_CHLRE Ubiquitin
          Length = 76

 Score =  127 bits (320), Expect = 3e-29
 Identities = 64/65 (98%), Positives = 65/65 (100%)
 Frame = +1

Query: 367 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 546
           MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 547 IQKES 561
           IQKES
Sbjct: 61  IQKES 65

>sp|P42740|UBIQ_AGLNE Ubiquitin
          Length = 76

 Score =  127 bits (319), Expect = 4e-29
 Identities = 64/65 (98%), Positives = 64/65 (98%)
 Frame = +1

Query: 367 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 546
           MQIFVKTLTGKTITLEVESSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 547 IQKES 561
           IQKES
Sbjct: 61  IQKES 65

>sp|P62990|UBIQ_BOVIN Ubiquitin
 sp|P62972|UBIQ_XENLA Ubiquitin
 sp|P62989|UBIQ_RAT Ubiquitin
 sp|Q867C4|UBIQ_PONPY Ubiquitin
 sp|P62974|UBIQ_PIG Ubiquitin
 sp|Q867C3|UBIQ_PANTR Ubiquitin
 sp|P68204|UBIQ_OPHHA Ubiquitin
 sp|P62991|UBIQ_MOUSE Ubiquitin
 sp|P68196|UBIQ_MANSE Ubiquitin
 sp|P68199|UBIQ_ICTPU Ubiquitin
 sp|Q867C2|UBIQ_GORGO Ubiquitin
 sp|P63051|UBIQ_FELCA Ubiquitin
 sp|P62977|UBIQ_CAVPO Ubiquitin
 sp|P63049|UBIQ_CANFA Ubiquitin
 sp|Q865C5|UBIQ_CAMDR Ubiquitin
 sp|P62975|UBIQ_RABIT Ubiquitin
 sp|P62988|UBIQ_HUMAN Ubiquitin
 sp|P62976|UBIQ_CRIGR Ubiquitin
 sp|P62973|UBIQ_CHICK Ubiquitin
 sp|P68201|UBIQ_PLUXY Ubiquitin
 sp|Q8MKD1|UBIQ_HORSE Ubiquitin
 sp|P68198|UBIQ_DROME Ubiquitin
 sp|P68197|UBIQ_CERCA Ubiquitin
 sp|P68195|UBIQ_SPOFR Ubiquitin
          Length = 76

 Score =  127 bits (318), Expect = 5e-29
 Identities = 64/65 (98%), Positives = 64/65 (98%)
 Frame = +1

Query: 367 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 546
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 547 IQKES 561
           IQKES
Sbjct: 61  IQKES 65

>sp|O46543|UBIQ_SHEEP Ubiquitin
          Length = 76

 Score =  127 bits (318), Expect = 5e-29
 Identities = 64/65 (98%), Positives = 64/65 (98%)
 Frame = +1

Query: 367 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 546
           MQIFVKTLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 547 IQKES 561
           IQKES
Sbjct: 61  IQKES 65

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,127,268
Number of Sequences: 369166
Number of extensions: 1752932
Number of successful extensions: 4416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4414
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00803

Planaria EST Database

DrC_00803

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail