Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_M02
(445 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14792|UBIQ_CAEEL Ubiquitin >gi|30580944|sp|P59669|UBIQ_... 98 7e-21
sp|P19848|UBIQ_COPCO Ubiquitin 98 7e-21
sp|P20685|UBIQ_TETPY Ubiquitin 98 7e-21
sp|P14624|UBIQ_CHLRE Ubiquitin 98 7e-21
sp|P08565|UBIQ_TRYCR Ubiquitin 98 7e-21
sp|P42740|UBIQ_AGLNE Ubiquitin 98 9e-21
sp|P62990|UBIQ_BOVIN Ubiquitin >gi|51703334|sp|P62972|UBIQ_... 97 1e-20
sp|O46543|UBIQ_SHEEP Ubiquitin 97 1e-20
sp|P84589|UBIQ_LUMTE Ubiquitin 97 1e-20
sp|P46574|UBIQ_EIMBO Ubiquitin 97 1e-20
>sp|P14792|UBIQ_CAEEL Ubiquitin
sp|P59669|UBIQ_GEOCY Ubiquitin
Length = 76
Score = 98.2 bits (243), Expect = 7e-21
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VE+SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 17 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P19848|UBIQ_COPCO Ubiquitin
Length = 76
Score = 98.2 bits (243), Expect = 7e-21
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P20685|UBIQ_TETPY Ubiquitin
Length = 76
Score = 98.2 bits (243), Expect = 7e-21
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VE+SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 17 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P14624|UBIQ_CHLRE Ubiquitin
Length = 76
Score = 98.2 bits (243), Expect = 7e-21
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKES
Sbjct: 17 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65
>sp|P08565|UBIQ_TRYCR Ubiquitin
Length = 76
Score = 98.2 bits (243), Expect = 7e-21
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKES
Sbjct: 17 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65
>sp|P42740|UBIQ_AGLNE Ubiquitin
Length = 76
Score = 97.8 bits (242), Expect = 9e-21
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VESSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 17 VESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P62990|UBIQ_BOVIN Ubiquitin
sp|P62972|UBIQ_XENLA Ubiquitin
sp|P62989|UBIQ_RAT Ubiquitin
sp|Q867C4|UBIQ_PONPY Ubiquitin
sp|P62974|UBIQ_PIG Ubiquitin
sp|Q867C3|UBIQ_PANTR Ubiquitin
sp|P68204|UBIQ_OPHHA Ubiquitin
sp|P62991|UBIQ_MOUSE Ubiquitin
sp|P68196|UBIQ_MANSE Ubiquitin
sp|P68199|UBIQ_ICTPU Ubiquitin
sp|Q867C2|UBIQ_GORGO Ubiquitin
sp|P63051|UBIQ_FELCA Ubiquitin
sp|P62977|UBIQ_CAVPO Ubiquitin
sp|P63049|UBIQ_CANFA Ubiquitin
sp|Q865C5|UBIQ_CAMDR Ubiquitin
sp|P62975|UBIQ_RABIT Ubiquitin
sp|P62988|UBIQ_HUMAN Ubiquitin
sp|P62976|UBIQ_CRIGR Ubiquitin
sp|P62973|UBIQ_CHICK Ubiquitin
sp|P68201|UBIQ_PLUXY Ubiquitin
sp|Q8MKD1|UBIQ_HORSE Ubiquitin
sp|P68198|UBIQ_DROME Ubiquitin
sp|P68197|UBIQ_CERCA Ubiquitin
sp|P68195|UBIQ_SPOFR Ubiquitin
Length = 76
Score = 97.4 bits (241), Expect = 1e-20
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|O46543|UBIQ_SHEEP Ubiquitin
Length = 76
Score = 97.4 bits (241), Expect = 1e-20
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P84589|UBIQ_LUMTE Ubiquitin
Length = 63
Score = 97.4 bits (241), Expect = 1e-20
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 6 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 54
>sp|P46574|UBIQ_EIMBO Ubiquitin
Length = 76
Score = 97.4 bits (241), Expect = 1e-20
Identities = 48/49 (97%), Positives = 48/49 (97%)
Frame = +1
Query: 1 VESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 147
VE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,931,316
Number of Sequences: 369166
Number of extensions: 823067
Number of successful extensions: 1930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1928
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)