Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_F15
(353 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79781|RS27A_CHICK 40S ribosomal protein S27a 82 4e-16
sp|P62978|RS27A_CAVPO 40S ribosomal protein S27a >gi|517017... 81 8e-16
sp|P68200|RS27A_ICTPU 40S ribosomal protein S27a 80 2e-15
sp|P62982|RS27A_RAT 40S ribosomal protein S27a >gi|51702784... 79 2e-15
sp|P59232|R27AB_ARATH 40S ribosomal protein S27a-2 78 7e-15
sp|P59233|R27AC_ARATH 40S ribosomal protein S27a-3 77 9e-15
sp|P59271|R27AA_ARATH 40S ribosomal protein S27a-1 76 2e-14
sp|P15357|RS27A_DROME 40S ribosomal protein S27a 76 3e-14
sp|P27923|RS27A_MAIZE 40S ribosomal protein S27a 76 3e-14
sp|P62981|RS27A_SOLTU 40S ribosomal protein S27a >gi|517027... 76 3e-14
>sp|P79781|RS27A_CHICK 40S ribosomal protein S27a
Length = 80
Score = 82.0 bits (201), Expect = 4e-16
Identities = 36/48 (75%), Positives = 39/48 (81%)
Frame = +2
Query: 179 VDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 322
VD NGKI RLR+ECP+E CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 32 VDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P62978|RS27A_CAVPO 40S ribosomal protein S27a
sp|P62992|RS27A_BOVIN 40S ribosomal protein S27a
sp|P62979|RS27A_HUMAN 40S ribosomal protein S27a
Length = 80
Score = 80.9 bits (198), Expect = 8e-16
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +2
Query: 179 VDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 322
VD NGKI RLR+ECP++ CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 32 VDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P68200|RS27A_ICTPU 40S ribosomal protein S27a
Length = 80
Score = 79.7 bits (195), Expect = 2e-15
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = +2
Query: 179 VDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 322
VD NGKI RLR+ECP + CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 32 VDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P62982|RS27A_RAT 40S ribosomal protein S27a
sp|P62983|RS27A_MOUSE 40S ribosomal protein S27a
Length = 80
Score = 79.3 bits (194), Expect = 2e-15
Identities = 34/48 (70%), Positives = 38/48 (79%)
Frame = +2
Query: 179 VDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 322
VD NGKI RLR+ECP++ CG GVFM +HFDR YCGKCCLTY NK E
Sbjct: 32 VDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCF-NKPE 78
>sp|P59232|R27AB_ARATH 40S ribosomal protein S27a-2
Length = 81
Score = 77.8 bits (190), Expect = 7e-15
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +2
Query: 179 VDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 316
VD +GK+QRLRKECPN +CG G FMA+HFDR YCGKC LTY++ +
Sbjct: 32 VDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
>sp|P59233|R27AC_ARATH 40S ribosomal protein S27a-3
Length = 81
Score = 77.4 bits (189), Expect = 9e-15
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = +2
Query: 179 VDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 316
+D +GK+QRLRKECPN +CG G FMA+HFDR YCGKC LTY++ +
Sbjct: 32 IDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
>sp|P59271|R27AA_ARATH 40S ribosomal protein S27a-1
Length = 80
Score = 76.3 bits (186), Expect = 2e-14
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = +2
Query: 179 VDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 322
VD +GK+QRL+KECP+ SCGPG FMA+HFDR YCGKC TY+ E
Sbjct: 32 VDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKADE 79
>sp|P15357|RS27A_DROME 40S ribosomal protein S27a
Length = 80
Score = 75.9 bits (185), Expect = 3e-14
Identities = 33/48 (68%), Positives = 37/48 (77%)
Frame = +2
Query: 179 VDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 322
VD NGKI RLR+ECP E+CG GVFMAAH DR YCGKC LT++ S E
Sbjct: 32 VDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSKPEE 79
>sp|P27923|RS27A_MAIZE 40S ribosomal protein S27a
Length = 79
Score = 75.9 bits (185), Expect = 3e-14
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +2
Query: 182 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 316
D+ GK+ RLRKECPN CG GVFMA HFDR YCGKC LTY+++ K
Sbjct: 34 DATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQK 78
>sp|P62981|RS27A_SOLTU 40S ribosomal protein S27a
sp|P62980|RS27A_LYCES 40S ribosomal protein S27a
Length = 80
Score = 75.9 bits (185), Expect = 3e-14
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +2
Query: 179 VDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHS 310
VD GK+QRLRKECPN CG G FMA HFDR YCGKC LTY+++
Sbjct: 32 VDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYN 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,539,192
Number of Sequences: 369166
Number of extensions: 669182
Number of successful extensions: 1301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)