Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_K13
(418 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63172|DYLX_HUMAN Cytoplasmic dynein light chain (T-comp... 143 2e-34
sp|Q9Z336|DYLX_RAT Cytoplasmic dynein light chain (T-comple... 143 2e-34
sp|P51807|DYLX_MOUSE Cytoplasmic dynein light chain (T-comp... 140 1e-33
sp|Q94524|DYLX_DROME Cytoplasmic dynein light chain (TCTEX-... 128 4e-30
sp|P51808|TCT1L_HUMAN T-complex associated-testis-expressed... 113 1e-25
sp|Q8SPS9|TCT1L_CANFA T-complex associated-testis-expressed... 109 3e-24
sp|P56387|TCT1L_MOUSE T-complex associated-testis-expressed... 107 1e-23
sp|Q9UTS6|DYLX_SCHPO Cytoplasmic dynein light chain (TCTEX-... 45 8e-05
sp|P14792|UBIQ_CAEEL Ubiquitin >gi|30580944|sp|P59669|UBIQ_... 36 0.036
sp|P19848|UBIQ_COPCO Ubiquitin 36 0.036
>sp|P63172|DYLX_HUMAN Cytoplasmic dynein light chain (T-complex testis-specific protein 1
homolog) (Protein CW-1)
sp|P63171|DYLX_BOVIN Cytoplasmic dynein light chain (T-complex testis-specific protein 1
homolog)
Length = 113
Score = 143 bits (360), Expect = 2e-34
Identities = 63/84 (75%), Positives = 76/84 (90%)
Frame = -2
Query: 342 GTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDNST 163
G + Y H+KVNQWT+ ++EQ+L+QLTKL KPFKYIV+CVIMQKNGAGLHTASSC+WD+ST
Sbjct: 30 GGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSST 89
Query: 162 DGSCTVKREKKSMYCIVSVFGLAI 91
DGSCTV+ E K+MYCIVS FGL+I
Sbjct: 90 DGSCTVRWENKTMYCIVSAFGLSI 113
>sp|Q9Z336|DYLX_RAT Cytoplasmic dynein light chain (T-complex testis-specific protein 1
homolog)
Length = 113
Score = 143 bits (360), Expect = 2e-34
Identities = 63/84 (75%), Positives = 76/84 (90%)
Frame = -2
Query: 342 GTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDNST 163
G + Y H+KVNQWT+ ++EQ+L+QLTKL KPFKYIV+CVIMQKNGAGLHTASSC+WD+ST
Sbjct: 30 GGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIVTCVIMQKNGAGLHTASSCFWDSST 89
Query: 162 DGSCTVKREKKSMYCIVSVFGLAI 91
DGSCTV+ E K+MYCIVS FGL+I
Sbjct: 90 DGSCTVRWENKTMYCIVSAFGLSI 113
>sp|P51807|DYLX_MOUSE Cytoplasmic dynein light chain (T-complex testis-specific protein
1) (TCTEX-1)
Length = 113
Score = 140 bits (352), Expect = 1e-33
Identities = 61/84 (72%), Positives = 76/84 (90%)
Frame = -2
Query: 342 GTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDNST 163
G + Y H+KVNQWT+ ++EQ+L+QLTKL +PFKYIV+CVIMQKNGAGLH+ASSC+WD+ST
Sbjct: 30 GGNAYQHSKVNQWTTNVLEQTLSQLTKLGRPFKYIVTCVIMQKNGAGLHSASSCFWDSST 89
Query: 162 DGSCTVKREKKSMYCIVSVFGLAI 91
DGSCTV+ E K+MYCIVS FGL+I
Sbjct: 90 DGSCTVRWENKTMYCIVSTFGLSI 113
>sp|Q94524|DYLX_DROME Cytoplasmic dynein light chain (TCTEX-1 protein homolog)
Length = 111
Score = 128 bits (322), Expect = 4e-30
Identities = 57/84 (67%), Positives = 68/84 (80%)
Frame = -2
Query: 342 GTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDNST 163
G + Y H+KVN WT ++E L LTK KP+KYIV+ +IMQKNGAGLHTASSCYW+N T
Sbjct: 28 GGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGLHTASSCYWNNDT 87
Query: 162 DGSCTVKREKKSMYCIVSVFGLAI 91
DGSCTV+ E K+MYCIVSVFGLA+
Sbjct: 88 DGSCTVRWENKTMYCIVSVFGLAV 111
>sp|P51808|TCT1L_HUMAN T-complex associated-testis-expressed 1-like (Protein 91/23)
Length = 116
Score = 113 bits (283), Expect = 1e-25
Identities = 47/86 (54%), Positives = 66/86 (76%)
Frame = -2
Query: 348 ISGTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDN 169
+ G Y HN +NQWT++I+EQSL L KL K +KYIV+C ++QK+ G HTASSC+WD
Sbjct: 29 VLGGEDYNHNNINQWTASIVEQSLTHLVKLGKAYKYIVTCAVVQKSAYGFHTASSCFWDT 88
Query: 168 STDGSCTVKREKKSMYCIVSVFGLAI 91
++DG+CTV+ E ++M CIV+VF +AI
Sbjct: 89 TSDGTCTVRWENRTMNCIVNVFAIAI 114
>sp|Q8SPS9|TCT1L_CANFA T-complex associated-testis-expressed 1-like
Length = 116
Score = 109 bits (272), Expect = 3e-24
Identities = 45/86 (52%), Positives = 65/86 (75%)
Frame = -2
Query: 348 ISGTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDN 169
+ G Y N +NQWT++I+EQSL L KL K +KYIV+C ++Q++ G HTASSC+WD
Sbjct: 29 VLGGEDYNQNNINQWTASIVEQSLTHLVKLGKAYKYIVTCAVVQRSAYGFHTASSCFWDT 88
Query: 168 STDGSCTVKREKKSMYCIVSVFGLAI 91
++DG+CTV+ E ++M CIV+VF +AI
Sbjct: 89 TSDGTCTVRWENRTMNCIVNVFAIAI 114
>sp|P56387|TCT1L_MOUSE T-complex associated-testis-expressed 1-like (Protein 91/23)
Length = 116
Score = 107 bits (267), Expect = 1e-23
Identities = 43/86 (50%), Positives = 66/86 (76%)
Frame = -2
Query: 348 ISGTSTYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQKNGAGLHTASSCYWDN 169
+ G + Y N +NQWT++I+EQS+ L KL K +KYIV+C ++Q++ G HTASSC+WD
Sbjct: 29 VLGGNDYNENNINQWTASIVEQSITHLVKLGKAYKYIVTCAVVQRSPYGFHTASSCFWDT 88
Query: 168 STDGSCTVKREKKSMYCIVSVFGLAI 91
++DG+CT++ E ++M CIV+VF +AI
Sbjct: 89 TSDGTCTIRWENRTMNCIVNVFAVAI 114
>sp|Q9UTS6|DYLX_SCHPO Cytoplasmic dynein light chain (TCTEX-1 protein homolog)
Length = 111
Score = 44.7 bits (104), Expect = 8e-05
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = -2
Query: 336 STYVHNKVNQWTSTIIEQSLNQLTKLNKPFKYIVSCVIMQK-----NGAGLHTASSCYWD 172
S Y +K + ++I LN L K + +K+IVS ++QK G+H A + W+
Sbjct: 25 SEYDGDKTAEMNQSVIYAVLNALNKETQSYKWIVSSTLVQKLPEDHPSRGVHAAHAACWN 84
Query: 171 NSTDGSCTVKREKKSMYCIVSVFGLAI 91
DG T+K +++ ++S+ ++I
Sbjct: 85 CEKDGMTTIKESGEAIDVVLSIMWISI 111
>sp|P14792|UBIQ_CAEEL Ubiquitin
sp|P59669|UBIQ_GEOCY Ubiquitin
Length = 76
Score = 35.8 bits (81), Expect = 0.036
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 367 MQIFVKTLTGKTITLEV 417
MQIFVKTLTGKTITLEV
Sbjct: 1 MQIFVKTLTGKTITLEV 17
>sp|P19848|UBIQ_COPCO Ubiquitin
Length = 76
Score = 35.8 bits (81), Expect = 0.036
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 367 MQIFVKTLTGKTITLEV 417
MQIFVKTLTGKTITLEV
Sbjct: 1 MQIFVKTLTGKTITLEV 17
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,071,864
Number of Sequences: 369166
Number of extensions: 835299
Number of successful extensions: 2075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2075
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)