Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_F18
(459 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14792|UBIQ_CAEEL Ubiquitin >gi|30580944|sp|P59669|UBIQ_... 105 6e-23
sp|P19848|UBIQ_COPCO Ubiquitin 105 6e-23
sp|P14624|UBIQ_CHLRE Ubiquitin 105 6e-23
sp|P42740|UBIQ_AGLNE Ubiquitin 104 8e-23
sp|P62990|UBIQ_BOVIN Ubiquitin >gi|51703334|sp|P62972|UBIQ_... 104 1e-22
sp|O46543|UBIQ_SHEEP Ubiquitin 104 1e-22
sp|P84589|UBIQ_LUMTE Ubiquitin 104 1e-22
sp|P69319|UBIQ_MAIZE Ubiquitin >gi|71153387|sp|P0C072|UBIQ_... 103 1e-22
sp|P61864|UBIQ_YEAST Ubiquitin >gi|59800425|sp|Q9Y848|UBIQ_... 103 1e-22
sp|P20685|UBIQ_TETPY Ubiquitin 103 1e-22
>sp|P14792|UBIQ_CAEEL Ubiquitin
sp|P59669|UBIQ_GEOCY Ubiquitin
Length = 76
Score = 105 bits (261), Expect = 6e-23
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITLEVE+SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 13 ITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P19848|UBIQ_COPCO Ubiquitin
Length = 76
Score = 105 bits (261), Expect = 6e-23
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P14624|UBIQ_CHLRE Ubiquitin
Length = 76
Score = 105 bits (261), Expect = 6e-23
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKES
Sbjct: 13 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65
>sp|P42740|UBIQ_AGLNE Ubiquitin
Length = 76
Score = 104 bits (260), Expect = 8e-23
Identities = 52/53 (98%), Positives = 52/53 (98%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITLEVESSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 13 ITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P62990|UBIQ_BOVIN Ubiquitin
sp|P62972|UBIQ_XENLA Ubiquitin
sp|P62989|UBIQ_RAT Ubiquitin
sp|Q867C4|UBIQ_PONPY Ubiquitin
sp|P62974|UBIQ_PIG Ubiquitin
sp|Q867C3|UBIQ_PANTR Ubiquitin
sp|P68204|UBIQ_OPHHA Ubiquitin
sp|P62991|UBIQ_MOUSE Ubiquitin
sp|P68196|UBIQ_MANSE Ubiquitin
sp|P68199|UBIQ_ICTPU Ubiquitin
sp|Q867C2|UBIQ_GORGO Ubiquitin
sp|P63051|UBIQ_FELCA Ubiquitin
sp|P62977|UBIQ_CAVPO Ubiquitin
sp|P63049|UBIQ_CANFA Ubiquitin
sp|Q865C5|UBIQ_CAMDR Ubiquitin
sp|P62975|UBIQ_RABIT Ubiquitin
sp|P62988|UBIQ_HUMAN Ubiquitin
sp|P62976|UBIQ_CRIGR Ubiquitin
sp|P62973|UBIQ_CHICK Ubiquitin
sp|P68201|UBIQ_PLUXY Ubiquitin
sp|Q8MKD1|UBIQ_HORSE Ubiquitin
sp|P68198|UBIQ_DROME Ubiquitin
sp|P68197|UBIQ_CERCA Ubiquitin
sp|P68195|UBIQ_SPOFR Ubiquitin
Length = 76
Score = 104 bits (259), Expect = 1e-22
Identities = 52/53 (98%), Positives = 52/53 (98%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|O46543|UBIQ_SHEEP Ubiquitin
Length = 76
Score = 104 bits (259), Expect = 1e-22
Identities = 52/53 (98%), Positives = 52/53 (98%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P84589|UBIQ_LUMTE Ubiquitin
Length = 63
Score = 104 bits (259), Expect = 1e-22
Identities = 52/53 (98%), Positives = 52/53 (98%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 2 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 54
>sp|P69319|UBIQ_MAIZE Ubiquitin
sp|P0C072|UBIQ_DESAN Ubiquitin
sp|P69321|UBIQ_ORYSA Ubiquitin
sp|P69326|UBIQ_WHEAT Ubiquitin
sp|P69325|UBIQ_SOYBN Ubiquitin
sp|P69324|UBIQ_SOLTU Ubiquitin
sp|P69323|UBIQ_PETCR Ubiquitin
sp|P69320|UBIQ_NICSY Ubiquitin
sp|P69318|UBIQ_LYCES Ubiquitin
sp|P69317|UBIQ_LUPPO Ubiquitin
sp|P69316|UBIQ_LUPAL Ubiquitin
sp|P69315|UBIQ_LINUS Ubiquitin
sp|P69314|UBIQ_HORVU Ubiquitin
sp|P69313|UBIQ_HELAN Ubiquitin
sp|P69312|UBIQ_DAUCA Ubiquitin
sp|P69311|UBIQ_BRARA Ubiquitin
sp|P69310|UBIQ_AVESA Ubiquitin
sp|P69309|UBIQ_AVEFA Ubiquitin
sp|P69308|UBIQ_ASPOF Ubiquitin
sp|P69322|UBIQ_PEA Ubiquitin
sp|P59263|UBIQ_ARATH Ubiquitin
Length = 76
Score = 103 bits (258), Expect = 1e-22
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKES
Sbjct: 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65
>sp|P61864|UBIQ_YEAST Ubiquitin
sp|Q9Y848|UBIQ_KLULA Ubiquitin
sp|P0C014|UBIQ_SCHPO Ubiquitin
sp|P61863|UBIQ_CRYNE Ubiquitin
sp|P61862|UBIQ_CANAL Ubiquitin
Length = 76
Score = 103 bits (258), Expect = 1e-22
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITLEVESSDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
>sp|P20685|UBIQ_TETPY Ubiquitin
Length = 76
Score = 103 bits (258), Expect = 1e-22
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = +3
Query: 3 ITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 161
ITL+VE+SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES
Sbjct: 13 ITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,174,239
Number of Sequences: 369166
Number of extensions: 827113
Number of successful extensions: 1963
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)