Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_E13
(219 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79781|RS27A_CHICK 40S ribosomal protein S27a 80 1e-15
sp|P62978|RS27A_CAVPO 40S ribosomal protein S27a >gi|517017... 79 2e-15
sp|P68200|RS27A_ICTPU 40S ribosomal protein S27a 78 5e-15
sp|P62982|RS27A_RAT 40S ribosomal protein S27a >gi|51702784... 78 7e-15
sp|P59233|R27AC_ARATH 40S ribosomal protein S27a-3 76 2e-14
sp|P59232|R27AB_ARATH 40S ribosomal protein S27a-2 76 2e-14
sp|P27923|RS27A_MAIZE 40S ribosomal protein S27a 76 3e-14
sp|P59271|R27AA_ARATH 40S ribosomal protein S27a-1 75 6e-14
sp|P15357|RS27A_DROME 40S ribosomal protein S27a 74 8e-14
sp|P62981|RS27A_SOLTU 40S ribosomal protein S27a >gi|517027... 74 8e-14
>sp|P79781|RS27A_CHICK 40S ribosomal protein S27a
Length = 80
Score = 80.5 bits (197), Expect = 1e-15
Identities = 35/47 (74%), Positives = 38/47 (80%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 191
D NGKI RLR+ECP+E CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 33 DENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P62978|RS27A_CAVPO 40S ribosomal protein S27a
sp|P62992|RS27A_BOVIN 40S ribosomal protein S27a
sp|P62979|RS27A_HUMAN 40S ribosomal protein S27a
Length = 80
Score = 79.3 bits (194), Expect = 2e-15
Identities = 34/47 (72%), Positives = 38/47 (80%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 191
D NGKI RLR+ECP++ CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 33 DENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P68200|RS27A_ICTPU 40S ribosomal protein S27a
Length = 80
Score = 78.2 bits (191), Expect = 5e-15
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 191
D NGKI RLR+ECP + CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 33 DENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P62982|RS27A_RAT 40S ribosomal protein S27a
sp|P62983|RS27A_MOUSE 40S ribosomal protein S27a
Length = 80
Score = 77.8 bits (190), Expect = 7e-15
Identities = 33/47 (70%), Positives = 37/47 (78%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 191
D NGKI RLR+ECP++ CG GVFM +HFDR YCGKCCLTY NK E
Sbjct: 33 DENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCF-NKPE 78
>sp|P59233|R27AC_ARATH 40S ribosomal protein S27a-3
Length = 81
Score = 76.3 bits (186), Expect = 2e-14
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 185
D +GK+QRLRKECPN +CG G FMA+HFDR YCGKC LTY++ +
Sbjct: 33 DGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
>sp|P59232|R27AB_ARATH 40S ribosomal protein S27a-2
Length = 81
Score = 76.3 bits (186), Expect = 2e-14
Identities = 30/45 (66%), Positives = 37/45 (82%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 185
D +GK+QRLRKECPN +CG G FMA+HFDR YCGKC LTY++ +
Sbjct: 33 DGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
>sp|P27923|RS27A_MAIZE 40S ribosomal protein S27a
Length = 79
Score = 75.9 bits (185), Expect = 3e-14
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 185
D+ GK+ RLRKECPN CG GVFMA HFDR YCGKC LTY+++ K
Sbjct: 34 DATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQK 78
>sp|P59271|R27AA_ARATH 40S ribosomal protein S27a-1
Length = 80
Score = 74.7 bits (182), Expect = 6e-14
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 191
D +GK+QRL+KECP+ SCGPG FMA+HFDR YCGKC TY+ E
Sbjct: 33 DGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKADE 79
>sp|P15357|RS27A_DROME 40S ribosomal protein S27a
Length = 80
Score = 74.3 bits (181), Expect = 8e-14
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 191
D NGKI RLR+ECP E+CG GVFMAAH DR YCGKC LT++ S E
Sbjct: 33 DENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSKPEE 79
>sp|P62981|RS27A_SOLTU 40S ribosomal protein S27a
sp|P62980|RS27A_LYCES 40S ribosomal protein S27a
Length = 80
Score = 74.3 bits (181), Expect = 8e-14
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = +3
Query: 51 DSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHS 179
D GK+QRLRKECPN CG G FMA HFDR YCGKC LTY+++
Sbjct: 33 DDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYN 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,909,416
Number of Sequences: 369166
Number of extensions: 462968
Number of successful extensions: 912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 68,354,980
effective HSP length: 44
effective length of database: 60,226,640
effective search space used: 1686345920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)