Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_C05
(193 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79781|RS27A_CHICK 40S ribosomal protein S27a 95 6e-20
sp|P62978|RS27A_CAVPO 40S ribosomal protein S27a >gi|517017... 94 1e-19
sp|P68200|RS27A_ICTPU 40S ribosomal protein S27a 92 3e-19
sp|P62982|RS27A_RAT 40S ribosomal protein S27a >gi|51702784... 92 4e-19
sp|P15357|RS27A_DROME 40S ribosomal protein S27a 89 4e-18
sp|P59232|R27AB_ARATH 40S ribosomal protein S27a-2 87 9e-18
sp|P59233|R27AC_ARATH 40S ribosomal protein S27a-3 87 1e-17
sp|P14799|RS27A_NEUCR 40S ribosomal protein S27a (CRP6) (S37) 87 2e-17
sp|P59271|R27AA_ARATH 40S ribosomal protein S27a-1 86 3e-17
sp|P62981|RS27A_SOLTU 40S ribosomal protein S27a >gi|517027... 86 4e-17
>sp|P79781|RS27A_CHICK 40S ribosomal protein S27a
Length = 80
Score = 94.7 bits (234), Expect = 6e-20
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 165
+VLKYYKVD NGKI RLR+ECP+E CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 25 AVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P62978|RS27A_CAVPO 40S ribosomal protein S27a
sp|P62992|RS27A_BOVIN 40S ribosomal protein S27a
sp|P62979|RS27A_HUMAN 40S ribosomal protein S27a
Length = 80
Score = 93.6 bits (231), Expect = 1e-19
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 165
+VLKYYKVD NGKI RLR+ECP++ CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 25 AVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P68200|RS27A_ICTPU 40S ribosomal protein S27a
Length = 80
Score = 92.4 bits (228), Expect = 3e-19
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 165
+VLKYYKVD NGKI RLR+ECP + CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 25 AVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P62982|RS27A_RAT 40S ribosomal protein S27a
sp|P62983|RS27A_MOUSE 40S ribosomal protein S27a
Length = 80
Score = 92.0 bits (227), Expect = 4e-19
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 165
+VLKYYKVD NGKI RLR+ECP++ CG GVFM +HFDR YCGKCCLTY NK E
Sbjct: 25 AVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCF-NKPE 78
>sp|P15357|RS27A_DROME 40S ribosomal protein S27a
Length = 80
Score = 88.6 bits (218), Expect = 4e-18
Identities = 39/55 (70%), Positives = 44/55 (80%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 165
+VLKYYKVD NGKI RLR+ECP E+CG GVFMAAH DR YCGKC LT++ S E
Sbjct: 25 AVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSKPEE 79
>sp|P59232|R27AB_ARATH 40S ribosomal protein S27a-2
Length = 81
Score = 87.4 bits (215), Expect = 9e-18
Identities = 35/53 (66%), Positives = 45/53 (84%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 159
+VL++YKVD +GK+QRLRKECPN +CG G FMA+HFDR YCGKC LTY++ +
Sbjct: 25 AVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
>sp|P59233|R27AC_ARATH 40S ribosomal protein S27a-3
Length = 81
Score = 87.0 bits (214), Expect = 1e-17
Identities = 34/53 (64%), Positives = 45/53 (84%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 159
+VL++YK+D +GK+QRLRKECPN +CG G FMA+HFDR YCGKC LTY++ +
Sbjct: 25 AVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
>sp|P14799|RS27A_NEUCR 40S ribosomal protein S27a (CRP6) (S37)
Length = 78
Score = 86.7 bits (213), Expect = 2e-17
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYM 147
+VLKYYKVDS+GKI RLR+ECPNE+CG GVFMAA DRQYCG+C LTY+
Sbjct: 25 AVLKYYKVDSDGKIDRLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYV 73
>sp|P59271|R27AA_ARATH 40S ribosomal protein S27a-1
Length = 80
Score = 85.9 bits (211), Expect = 3e-17
Identities = 35/55 (63%), Positives = 44/55 (80%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 165
+VL++YKVD +GK+QRL+KECP+ SCGPG FMA+HFDR YCGKC TY+ E
Sbjct: 25 AVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKADE 79
>sp|P62981|RS27A_SOLTU 40S ribosomal protein S27a
sp|P62980|RS27A_LYCES 40S ribosomal protein S27a
Length = 80
Score = 85.5 bits (210), Expect = 4e-17
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +1
Query: 1 SVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHS 153
+VL++YKVD GK+QRLRKECPN CG G FMA HFDR YCGKC LTY+++
Sbjct: 25 AVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYN 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,021,712
Number of Sequences: 369166
Number of extensions: 420300
Number of successful extensions: 953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1732899140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)