Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_A07
(205 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79781|RS27A_CHICK 40S ribosomal protein S27a 100 2e-21
sp|P62978|RS27A_CAVPO 40S ribosomal protein S27a >gi|517017... 99 4e-21
sp|P68200|RS27A_ICTPU 40S ribosomal protein S27a 97 9e-21
sp|P62982|RS27A_RAT 40S ribosomal protein S27a >gi|51702784... 97 1e-20
sp|P15357|RS27A_DROME 40S ribosomal protein S27a 94 1e-19
sp|P59232|R27AB_ARATH 40S ribosomal protein S27a-2 92 3e-19
sp|P59233|R27AC_ARATH 40S ribosomal protein S27a-3 92 4e-19
sp|P59271|R27AA_ARATH 40S ribosomal protein S27a-1 91 8e-19
sp|P62981|RS27A_SOLTU 40S ribosomal protein S27a >gi|517027... 91 1e-18
sp|P14799|RS27A_NEUCR 40S ribosomal protein S27a (CRP6) (S37) 90 1e-18
>sp|P79781|RS27A_CHICK 40S ribosomal protein S27a
Length = 80
Score = 99.8 bits (247), Expect = 2e-21
Identities = 45/58 (77%), Positives = 49/58 (84%)
Frame = +1
Query: 4 VKLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 177
VKL+VLKYYKVD NGKI RLR+ECP+E CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 22 VKLAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P62978|RS27A_CAVPO 40S ribosomal protein S27a
sp|P62992|RS27A_BOVIN 40S ribosomal protein S27a
sp|P62979|RS27A_HUMAN 40S ribosomal protein S27a
Length = 80
Score = 98.6 bits (244), Expect = 4e-21
Identities = 44/58 (75%), Positives = 49/58 (84%)
Frame = +1
Query: 4 VKLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 177
VKL+VLKYYKVD NGKI RLR+ECP++ CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 22 VKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P68200|RS27A_ICTPU 40S ribosomal protein S27a
Length = 80
Score = 97.4 bits (241), Expect = 9e-21
Identities = 44/58 (75%), Positives = 48/58 (82%)
Frame = +1
Query: 4 VKLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 177
VKL+VLKYYKVD NGKI RLR+ECP + CG GVFMA+HFDR YCGKCCLTY NK E
Sbjct: 22 VKLAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCF-NKPE 78
>sp|P62982|RS27A_RAT 40S ribosomal protein S27a
sp|P62983|RS27A_MOUSE 40S ribosomal protein S27a
Length = 80
Score = 97.1 bits (240), Expect = 1e-20
Identities = 43/58 (74%), Positives = 48/58 (82%)
Frame = +1
Query: 4 VKLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 177
VKL+VLKYYKVD NGKI RLR+ECP++ CG GVFM +HFDR YCGKCCLTY NK E
Sbjct: 22 VKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCF-NKPE 78
>sp|P15357|RS27A_DROME 40S ribosomal protein S27a
Length = 80
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/58 (72%), Positives = 47/58 (81%)
Frame = +1
Query: 4 VKLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 177
VKL+VLKYYKVD NGKI RLR+ECP E+CG GVFMAAH DR YCGKC LT++ S E
Sbjct: 22 VKLAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSKPEE 79
>sp|P59232|R27AB_ARATH 40S ribosomal protein S27a-2
Length = 81
Score = 92.4 bits (228), Expect = 3e-19
Identities = 38/56 (67%), Positives = 48/56 (85%)
Frame = +1
Query: 4 VKLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 171
VKL+VL++YKVD +GK+QRLRKECPN +CG G FMA+HFDR YCGKC LTY++ +
Sbjct: 22 VKLAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
>sp|P59233|R27AC_ARATH 40S ribosomal protein S27a-3
Length = 81
Score = 92.0 bits (227), Expect = 4e-19
Identities = 37/56 (66%), Positives = 48/56 (85%)
Frame = +1
Query: 4 VKLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNK 171
VKL+VL++YK+D +GK+QRLRKECPN +CG G FMA+HFDR YCGKC LTY++ +
Sbjct: 22 VKLAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKE 77
>sp|P59271|R27AA_ARATH 40S ribosomal protein S27a-1
Length = 80
Score = 90.9 bits (224), Expect = 8e-19
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = +1
Query: 4 VKLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHSNKTE 177
VKL+VL++YKVD +GK+QRL+KECP+ SCGPG FMA+HFDR YCGKC TY+ E
Sbjct: 22 VKLAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKADE 79
>sp|P62981|RS27A_SOLTU 40S ribosomal protein S27a
sp|P62980|RS27A_LYCES 40S ribosomal protein S27a
Length = 80
Score = 90.5 bits (223), Expect = 1e-18
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = +1
Query: 4 VKLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYMHS 165
VKL+VL++YKVD GK+QRLRKECPN CG G FMA HFDR YCGKC LTY+++
Sbjct: 22 VKLAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYN 75
>sp|P14799|RS27A_NEUCR 40S ribosomal protein S27a (CRP6) (S37)
Length = 78
Score = 90.1 bits (222), Expect = 1e-18
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 7 KLSVLKYYKVDSNGKIQRLRKECPNESCGPGVFMAAHFDRQYCGKCCLTYM 159
KL+VLKYYKVDS+GKI RLR+ECPNE+CG GVFMAA DRQYCG+C LTY+
Sbjct: 23 KLAVLKYYKVDSDGKIDRLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYV 73
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,134,009
Number of Sequences: 369166
Number of extensions: 448912
Number of successful extensions: 1012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 68,354,980
effective HSP length: 39
effective length of database: 61,150,315
effective search space used: 1712208820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)