Planaria EST Database

DrC_00794

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00794
         (1170 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9R0Q6|ARC1A_MOUSE  Actin-related protein 2/3 complex sub...   275   1e-73
sp|Q92747|ARC1A_HUMAN  Actin-related protein 2/3 complex sub...   274   3e-73
sp|Q99PD4|ARC1A_RAT  Actin-related protein 2/3 complex subun...   273   5e-73
sp|O15143|ARC1B_HUMAN  Actin-related protein 2/3 complex sub...   271   3e-72
sp|O88656|ARC1B_RAT  Actin-related protein 2/3 complex subun...   270   6e-72
sp|Q9WV32|ARC1B_MOUSE  Actin-related protein 2/3 complex sub...   264   4e-70
sp|P78774|ARPC1_SCHPO  Probable ARP2/3 complex 41 kDa subuni...   222   1e-57
sp|P38328|ARPC1_YEAST  Probable ARP2/3 complex 41 kDa subuni...   187   6e-47
sp|Q8YRI1|YY46_ANASP  Hypothetical WD-repeat protein alr3466       43   0.002
sp|Q8CGF6|WDR47_MOUSE  WD-repeat protein 47                        43   0.002

>sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
           (Sid 329)
          Length = 370

 Score =  275 bits (704), Expect = 1e-73
 Identities = 137/309 (44%), Positives = 197/309 (63%), Gaps = 4/309 (1%)
 Frame = +2

Query: 2   KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
           +IV+C  DRNAYVW++ D  WKP LVIL++NRAATFV+WSPLENKFAVGS A+LIS+C F
Sbjct: 66  RIVTCGADRNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYF 125

Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
           ++ ND+WVSKH+KK I ST+  LDWHP+N +LA GS DF  RV+ A +K  D     + W
Sbjct: 126 ESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPW 185

Query: 362 GTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMI 535
           G+K+ F  L+ E    G  GW+H ++FS  GN+L W +H ST+ VA  S S Q   V  +
Sbjct: 186 GSKMPFGQLMSEFGGSGTGGWVHGVSFSASGNRLAWVSHDSTVSVADASKSVQ---VSTL 242

Query: 536 LMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TDKDQLKLGTSLD-SKEELNTNATLSAK 709
             + LP L++ + + N+V+ AGHDC P   +  D+  L   + LD  K+ +  N  +SA 
Sbjct: 243 RTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDVPKQSIQRN--MSAM 300

Query: 710 DRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKTL 889
           +RFR +D+ AT +  ++ + + H+N+I ++ I +      +   T G DG + +WD KTL
Sbjct: 301 ERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTL 360

Query: 890 SQKMSDLKI 916
              +  L+I
Sbjct: 361 ESSIQGLRI 369

>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
          Length = 370

 Score =  274 bits (701), Expect = 3e-73
 Identities = 137/309 (44%), Positives = 197/309 (63%), Gaps = 4/309 (1%)
 Frame = +2

Query: 2   KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
           +IV+C  DRNAYVW++ D  WKP LVIL++NRAATFV+WSPLENKFAVGS A+LIS+C F
Sbjct: 66  RIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYF 125

Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
           +  ND+WVSKH+KK I ST+  LDWHP+N +LA GS DF  RV+ A +K  D     + W
Sbjct: 126 EAENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKKASTPW 185

Query: 362 GTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMI 535
           G+K+ F  L+ E    G  GW+H ++FS  G++L W +H ST+ VA  S S Q  ++K  
Sbjct: 186 GSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVSTLK-- 243

Query: 536 LMDNLPFLTLVWAAPNTVIGAGHDCVPFT-ISTDKDQLKLGTSLD-SKEELNTNATLSAK 709
             + LP L++ + + N+V+ AGHDC P   I  D+  L   + LD  K+ +  N  +SA 
Sbjct: 244 -TEFLPLLSVSFVSENSVVAAGHDCCPMLFIYDDRGCLTFVSKLDIPKQSIQRN--MSAM 300

Query: 710 DRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKTL 889
           +RFR +D+ AT +  ++ + + H+N+I ++ I +      +   T G DG + +WD KTL
Sbjct: 301 ERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTL 360

Query: 890 SQKMSDLKI 916
              +  L+I
Sbjct: 361 ESSIQGLRI 369

>sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A
          Length = 370

 Score =  273 bits (699), Expect = 5e-73
 Identities = 136/309 (44%), Positives = 197/309 (63%), Gaps = 4/309 (1%)
 Frame = +2

Query: 2   KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
           +IV+C  DRNAYVW++ D  WKP LVIL++NRAATFV+WSPLENKFAVGS A+LIS+C F
Sbjct: 66  RIVTCGADRNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYF 125

Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
           ++ ND+WVSKH+KK I ST+  LDWHP+N +LA GS DF  RV+ A +K  D     + W
Sbjct: 126 ESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPW 185

Query: 362 GTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMI 535
           G+K+ F  L+ E    G  GW+H ++FS  G++L W +H ST+ VA  S S Q   V  +
Sbjct: 186 GSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQ---VSTL 242

Query: 536 LMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TDKDQLKLGTSLD-SKEELNTNATLSAK 709
             + LP L++ + + N+V+ AGHDC P   +  D+  L   + LD  K+ +  N  +SA 
Sbjct: 243 RTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDVPKQSIQRN--MSAM 300

Query: 710 DRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKTL 889
           +RFR +D+ AT +  ++ + + H+N+I ++ I +      +   T G DG + +WD KTL
Sbjct: 301 ERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTL 360

Query: 890 SQKMSDLKI 916
              +  L+I
Sbjct: 361 ESSIQGLRI 369

>sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
           subunit) (p41-ARC)
          Length = 372

 Score =  271 bits (692), Expect = 3e-72
 Identities = 126/311 (40%), Positives = 196/311 (63%), Gaps = 5/311 (1%)
 Frame = +2

Query: 2   KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
           +IV+C TDRNAYVW    ++WKP LVIL++NRAA  VRW+P ENKFAVGS +++ISIC F
Sbjct: 66  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYF 125

Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
           +  ND+WV KH+KK I ST+  LDWHP+N +LA GS DF  R++ A +K  +     + W
Sbjct: 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185

Query: 362 GTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMILM 541
           G+K+ F  L++ES    GW+H + FS  G+++ W +H ST+C+A    + +  +V  +  
Sbjct: 186 GSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLA---DADKKMAVATLAS 242

Query: 542 DNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQLKLGTSLDSKEELNTNATLSAKDR 715
           + LP L L +   N+++ AGHDC P  FT       L  G  LD  ++ ++   L+A++R
Sbjct: 243 ETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQ-SSQRGLTARER 301

Query: 716 FRQIDRIATADSNDSI---INSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKT 886
           F+ +D+ A+++   +    ++S HKN++++I ++ G         T G DG + +WD+K+
Sbjct: 302 FQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKS 361

Query: 887 LSQKMSDLKIQ 919
           L   + DLKI+
Sbjct: 362 LESALKDLKIK 372

>sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
           subunit) (p41-ARC)
          Length = 372

 Score =  270 bits (690), Expect = 6e-72
 Identities = 125/311 (40%), Positives = 196/311 (63%), Gaps = 5/311 (1%)
 Frame = +2

Query: 2   KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
           +IV+C TDRNAYVW    ++WKP LVIL++NRAA  VRW+P ENKFAVGS +++ISIC F
Sbjct: 66  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYF 125

Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
           +  ND+WV KH+KK I ST+  LDWHP+N +LA GS DF  R++ A +K  +     + W
Sbjct: 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185

Query: 362 GTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMILM 541
           G+K+ F  L++ES    GW+H + FS  G+++ W +H ST+C+     +++  +V  +  
Sbjct: 186 GSKMPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLV---DAEKKMAVATLAS 242

Query: 542 DNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQLKLGTSLDSKEELNTNATLSAKDR 715
           + LP L + +   N+++ AGHDC P  FT       L  G  LD  ++ N+   L+A++R
Sbjct: 243 ETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGTLSFGGRLDVPKQ-NSQRGLTARER 301

Query: 716 FRQIDRIATADSNDSI---INSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKT 886
           F+ +D+ A+++   +    ++S HKN++++I ++ G         T G DG + +WD+K+
Sbjct: 302 FQNLDKKASSEGGAATGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKS 361

Query: 887 LSQKMSDLKIQ 919
           L   + DLKI+
Sbjct: 362 LESALKDLKIR 372

>sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
           subunit) (p41-ARC)
          Length = 372

 Score =  264 bits (674), Expect = 4e-70
 Identities = 122/311 (39%), Positives = 194/311 (62%), Gaps = 5/311 (1%)
 Frame = +2

Query: 2   KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
           +IV+C TDRNAYVW    ++WKP LVIL++NRAA  VRW+P ENKF VGS +++ISIC F
Sbjct: 66  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFRVGSGSRVISICYF 125

Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
           +  ND+WV KH+KK I ST+  LDWHP+N +LA GS DF  R++ A +K  +     + W
Sbjct: 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185

Query: 362 GTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMILM 541
           G+K+ F  L++ES    GW+H + FS  G+++ W +H ST+C+     + +  +V  +  
Sbjct: 186 GSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLV---DADKKMAVATLAS 242

Query: 542 DNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQLKLGTSLDSKEELNTNATLSAKDR 715
           + LP L + +   N+++ AGHDC P  FT       L  G  LD  ++ ++   ++A++R
Sbjct: 243 ETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQ-SSQRGMTARER 301

Query: 716 FRQIDRIATADSNDSI---INSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKT 886
           F+ +D+ A+++   +    ++S HKN++++I ++ G         T G DG + +WD+K+
Sbjct: 302 FQNLDKKASSEGGAATGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKS 361

Query: 887 LSQKMSDLKIQ 919
           L   + DLKI+
Sbjct: 362 LESALKDLKIK 372

>sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
          Length = 377

 Score =  222 bits (566), Expect = 1e-57
 Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 18/311 (5%)
 Frame = +2

Query: 2   KIVSCSTDRNAYVWA-RSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICS 178
           +IV+CS DRNAYV+  R D +WK  LV+L+LNRAATFVRWSP E+KFAVGS A++IS+C 
Sbjct: 69  RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCY 128

Query: 179 FDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESN 358
           F+  ND+WVSKHLK+ + STI  LDWHP+N +LA G  D    V  A ++  D   + S 
Sbjct: 129 FEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASV 188

Query: 359 WGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPP-SVKMI 535
           WG++L FN++  E   G GW+H++ FS  GN L ++ H S++ +A  S  +QPP ++  +
Sbjct: 189 WGSRLPFNTVCAEYPSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247

Query: 536 LMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDKD------QLKLGTSLDS--------- 670
            +  LP  +L+WA  + ++ AG++  P  +  ++        L  GTS  S         
Sbjct: 248 KLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE 307

Query: 671 -KEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTI 847
            +EE    +  + +  FR +D   ++ S  S + + H+N I  +R   G+ G+    ++ 
Sbjct: 308 GREEEGPVSFTALRSTFRNMDLKGSSQSISS-LPTVHQNMIATLRPYAGTPGNITAFTSS 366

Query: 848 GRDGQLILWDL 880
           G DG+++LW L
Sbjct: 367 GTDGRVVLWTL 377

>sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
          Length = 384

 Score =  187 bits (474), Expect = 6e-47
 Identities = 110/318 (34%), Positives = 172/318 (54%), Gaps = 25/318 (7%)
 Frame = +2

Query: 2    KIVSCSTDRNAYVWAR-SDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICS 178
            +IV+CS DRNAYVW   SD ++KP LV+L++NRAAT V W+P   KFAVGSSA++I++C 
Sbjct: 76   RIVTCSQDRNAYVWEPLSDGTYKPTLVLLRINRAATSVTWAPNGYKFAVGSSARIIAVCY 135

Query: 179  FDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKE-- 352
            ++  N++WVSKH+KK I STI CL WH +  +LA G TD  +RV+   +K  D  SKE  
Sbjct: 136  YEHENNWWVSKHIKKPIKSTINCLSWHANGVLLAAGGTDGFMRVFSGFIKGLD--SKESV 193

Query: 353  --SNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSV 526
              S WG K  F  L+ E   G  +IH + + +   ++ +  H  T+ V       Q P  
Sbjct: 194  AGSPWGQKFPFGCLIREWYQG-SYIHDVEWRSQMERIAYVAHDGTLNVV----DYQSPVQ 248

Query: 527  KMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDKDQLKLGTSLDSKEELNTNAT--- 697
             +   + LP+ +LVW   + ++  G+ C P   S   +  K   +LD  +   ++A    
Sbjct: 249  SVNAPEGLPYRSLVWINDHEIVCGGYSCHPVLFSEASEGWKFAKNLDKSDNNKSSALTAS 308

Query: 698  -----------------LSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGS 826
                             +SA  +F+++D      ++  +  S H+NAI E+R    SNG 
Sbjct: 309  GNTDELSGNNDESSTFGISALRKFKELDLKGKVSTD--VQESAHENAIVELRPFAESNGQ 366

Query: 827  AQVLSTIGRDGQLILWDL 880
               +S+ G DG+++++ +
Sbjct: 367  ITQVSSCGLDGKIVIYTI 384

>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
          Length = 1526

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
 Frame = +2

Query: 5    IVSCSTDRNAYVWARSDKSWKPLLVILQLNRA-ATFVRWSPLENKFAVGSSAKLISICSF 181
            + S S D+   +W   D S    L ILQ + +    V ++P  +  A GSS + + +   
Sbjct: 1173 LASGSGDQTVRLW---DISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEI 1229

Query: 182  DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVY-CALLKSHDVASKESN 358
            +++      +     +NS +    ++PD ++LA GS+D  VR++  +  K        +N
Sbjct: 1230 NSSKCLCTFQGHTSWVNSVV----FNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTN 1285

Query: 359  WGTKLTFNS--------------LLWES---------EGGLGWIHSIAFSNDGNKLIWST 469
            W   + FN                LWE          +G   W+ S+ FS DG  L   +
Sbjct: 1286 WVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGS 1345

Query: 470  HSSTICVATVSGSQ 511
               T+ + ++S  +
Sbjct: 1346 DDQTVRLWSISSGE 1359


 Score = 41.6 bits (96), Expect = 0.004
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 24/158 (15%)
 Frame = +2

Query: 110  VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 289
            V +SP    FA G S  ++      T  +    K      NS +  + +  D  +LA GS
Sbjct: 870  VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCK----GHNSWVNSVGFSQDGKMLASGS 925

Query: 290  TDFHVRVY-------CALLKSHD--------------VASKESNWGTKL---TFNSLLWE 397
             D  VR++           K H               +AS  S+   +L   +    L+ 
Sbjct: 926  DDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYI 985

Query: 398  SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 511
             +G  GW++S+AF+ DG+ L   +   T+ +  +S SQ
Sbjct: 986  FQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQ 1023


 Score = 36.2 bits (82), Expect = 0.19
 Identities = 38/169 (22%), Positives = 70/169 (41%)
 Frame = +2

Query: 5    IVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSFD 184
            + S S D+   +W  S  S   L  +         V +SP     A G   +++ +    
Sbjct: 1047 LASGSDDQTVRLWDIS--SGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDIS 1104

Query: 185  TNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWG 364
            + N  +  +       S +  L + P+   LA GS+D  VR++       D++SK+    
Sbjct: 1105 SGNCLYTLQ----GYTSWVRFLVFSPNGVTLANGSSDQIVRLW-------DISSKKC--- 1150

Query: 365  TKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 511
                    L+  +G   W++++AFS DG  L   +   T+ +  +S S+
Sbjct: 1151 --------LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSK 1191


 Score = 34.3 bits (77), Expect = 0.70
 Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 24/193 (12%)
 Frame = +2

Query: 5    IVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSFD 184
            + S S+D+   +W  S  S K L            V ++P  +  A GS  + + +    
Sbjct: 1257 LASGSSDKTVRLWDIS--SSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEIS 1314

Query: 185  TNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYC---------------- 316
            ++       H  +   S ++ + + PD  +LA GS D  VR++                 
Sbjct: 1315 SSKCL----HTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNW 1370

Query: 317  --ALLKSHDVASKESNWGTK------LTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTH 472
              +++ S D A   S  G +      ++    L+  +G   W+ SI FS DG  L   + 
Sbjct: 1371 VGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSD 1430

Query: 473  SSTICVATVSGSQ 511
              T+ +  +S  +
Sbjct: 1431 DQTVRLWNISSGE 1443


 Score = 31.6 bits (70), Expect = 4.6
 Identities = 36/160 (22%), Positives = 63/160 (39%)
 Frame = +2

Query: 5    IVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSFD 184
            + S S D+   +W+ S  S + L   L        V +SP     A GS  + + + S  
Sbjct: 1341 LASGSDDQTVRLWSIS--SGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSIS 1398

Query: 185  TNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWG 364
            +    +  +      N+ +  + + PD  +LA GS D  VR++                 
Sbjct: 1399 SGKCLYTLQ----GHNNWVGSIVFSPDGTLLASGSDDQTVRLW----------------- 1437

Query: 365  TKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTI 484
              ++    L+   G +  + S+AFS+DG  L   +   TI
Sbjct: 1438 -NISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETI 1476

>sp|Q8CGF6|WDR47_MOUSE WD-repeat protein 47
          Length = 920

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
 Frame = +2

Query: 53  DKSWKPLLVI--LQLNRAATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLK-- 220
           DKS K  + I  L+  +A   V + P  + +AVGS++K + +C++    D     + K  
Sbjct: 592 DKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPEKMDASAHDNPKQP 651

Query: 221 -------KNINSTITCLDWHPDNNVLACGSTDFHVRV 310
                  K+   +I C+ W P   +LA GS D +V+V
Sbjct: 652 VVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKV 688

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,883,743
Number of Sequences: 369166
Number of extensions: 2746175
Number of successful extensions: 6978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6920
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 13104459300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00794

  1. Dr_sW_016_P24
  2. Dr_sW_022_N05
  3. Dr_sW_020_H16
  4. Dr_sW_008_B22
  5. Dr_sW_017_F12
  6. Dr_sW_026_E03
  7. Dr_sW_015_K10
  8. Dr_sW_018_G23