Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_022_N05 (711 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex sub... 194 2e-49 sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex sub... 193 4e-49 sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subun... 192 7e-49 sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex sub... 185 9e-47 sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subun... 185 1e-46 sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex sub... 179 8e-45 sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subuni... 160 2e-39 sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subuni... 127 4e-29 sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 42 0.002 sp|Q93847|YZLL_CAEEL Hypothetical WD-repeat protein K04G11.... 41 0.003
>sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A (SOP2-like protein) (Sid 329) Length = 370 Score = 194 bits (493), Expect = 2e-49 Identities = 100/221 (45%), Positives = 141/221 (63%), Gaps = 4/221 (1%) Frame = +1 Query: 1 TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180 TFV+WSPLENKFAVGS A+LIS+C F++ ND+WVSKH+KK I ST+ LDWHP+N +LA Sbjct: 100 TFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAA 159 Query: 181 GSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKL 354 GS DF RV+ A +K D + WG+K+ F L+ E G GW+H ++FS GN+L Sbjct: 160 GSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGNRL 219 Query: 355 IWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TD 531 W +H ST+ VA S S Q V + + LP L++ + + N+V+ AGHDC P + D Sbjct: 220 AWVSHDSTVSVADASKSVQ---VSTLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDD 276 Query: 532 KDQLKLGTSLD-SKEELNTNATLSAKDRFRQIDRIATADSQ 651 + L + LD K+ + N +SA +RFR +D+ AT + + Sbjct: 277 RGCLTFVSKLDVPKQSIQRN--MSAMERFRNMDKRATTEDR 315
>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A (SOP2-like protein) Length = 370 Score = 193 bits (490), Expect = 4e-49 Identities = 100/221 (45%), Positives = 141/221 (63%), Gaps = 4/221 (1%) Frame = +1 Query: 1 TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180 TFV+WSPLENKFAVGS A+LIS+C F+ ND+WVSKH+KK I ST+ LDWHP+N +LA Sbjct: 100 TFVKWSPLENKFAVGSGARLISVCYFEAENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAA 159 Query: 181 GSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKL 354 GS DF RV+ A +K D + WG+K+ F L+ E G GW+H ++FS G++L Sbjct: 160 GSCDFKCRVFSAYIKEVDEKKASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRL 219 Query: 355 IWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFT-ISTD 531 W +H ST+ VA S S Q ++K + LP L++ + + N+V+ AGHDC P I D Sbjct: 220 AWVSHDSTVSVADASKSVQVSTLK---TEFLPLLSVSFVSENSVVAAGHDCCPMLFIYDD 276 Query: 532 KDQLKLGTSLD-SKEELNTNATLSAKDRFRQIDRIATADSQ 651 + L + LD K+ + N +SA +RFR +D+ AT + + Sbjct: 277 RGCLTFVSKLDIPKQSIQRN--MSAMERFRNMDKRATTEDR 315
Score = 30.0 bits (66), Expect = 6.3 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +1 Query: 76 FDTNNDFWVSKHLKKNINSTITCLDWHP-DNNVLACGS 186 + N WV H K N IT +DW P + ++ CG+ Sbjct: 35 YKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGA 72
>sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A Length = 370 Score = 192 bits (488), Expect = 7e-49 Identities = 99/221 (44%), Positives = 141/221 (63%), Gaps = 4/221 (1%) Frame = +1 Query: 1 TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180 TFV+WSPLENKFAVGS A+LIS+C F++ ND+WVSKH+KK I ST+ LDWHP+N +LA Sbjct: 100 TFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAA 159 Query: 181 GSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKL 354 GS DF RV+ A +K D + WG+K+ F L+ E G GW+H ++FS G++L Sbjct: 160 GSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRL 219 Query: 355 IWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TD 531 W +H ST+ VA S S Q V + + LP L++ + + N+V+ AGHDC P + D Sbjct: 220 AWVSHDSTVSVADASKSVQ---VSTLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDD 276 Query: 532 KDQLKLGTSLD-SKEELNTNATLSAKDRFRQIDRIATADSQ 651 + L + LD K+ + N +SA +RFR +D+ AT + + Sbjct: 277 RGCLTFVSKLDVPKQSIQRN--MSAMERFRNMDKRATTEDR 315
>sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa subunit) (p41-ARC) Length = 372 Score = 185 bits (470), Expect = 9e-47 Identities = 86/215 (40%), Positives = 135/215 (62%), Gaps = 2/215 (0%) Frame = +1 Query: 7 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186 VRW+P ENKFAVGS +++ISIC F+ ND+WV KH+KK I ST+ LDWHP+N +LA GS Sbjct: 102 VRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGS 161 Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366 DF R++ A +K + + WG+K+ F L++ES GW+H + FS G+++ W + Sbjct: 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVS 221 Query: 367 HSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQ 540 H ST+C+A + + +V + + LP L L + N+++ AGHDC P FT Sbjct: 222 HDSTVCLA---DADKKMAVATLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGM 278 Query: 541 LKLGTSLDSKEELNTNATLSAKDRFRQIDRIATAD 645 L G LD ++ ++ L+A++RF+ +D+ A+++ Sbjct: 279 LSFGGRLDVPKQ-SSQRGLTARERFQNLDKKASSE 312
>sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa subunit) (p41-ARC) Length = 372 Score = 185 bits (469), Expect = 1e-46 Identities = 85/215 (39%), Positives = 135/215 (62%), Gaps = 2/215 (0%) Frame = +1 Query: 7 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186 VRW+P ENKFAVGS +++ISIC F+ ND+WV KH+KK I ST+ LDWHP+N +LA GS Sbjct: 102 VRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGS 161 Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366 DF R++ A +K + + WG+K+ F L++ES GW+H + FS G+++ W + Sbjct: 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAGGSRVAWVS 221 Query: 367 HSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQ 540 H ST+C+ +++ +V + + LP L + + N+++ AGHDC P FT Sbjct: 222 HDSTVCLV---DAEKKMAVATLASETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGT 278 Query: 541 LKLGTSLDSKEELNTNATLSAKDRFRQIDRIATAD 645 L G LD ++ N+ L+A++RF+ +D+ A+++ Sbjct: 279 LSFGGRLDVPKQ-NSQRGLTARERFQNLDKKASSE 312
>sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa subunit) (p41-ARC) Length = 372 Score = 179 bits (453), Expect = 8e-45 Identities = 82/215 (38%), Positives = 133/215 (61%), Gaps = 2/215 (0%) Frame = +1 Query: 7 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186 VRW+P ENKF VGS +++ISIC F+ ND+WV KH+KK I ST+ LDWHP+N +LA GS Sbjct: 102 VRWAPNENKFRVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGS 161 Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366 DF R++ A +K + + WG+K+ F L++ES GW+H + FS G+++ W + Sbjct: 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVS 221 Query: 367 HSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQ 540 H ST+C+ + + +V + + LP L + + N+++ AGHDC P FT Sbjct: 222 HDSTVCLV---DADKKMAVATLASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVT 278 Query: 541 LKLGTSLDSKEELNTNATLSAKDRFRQIDRIATAD 645 L G LD ++ ++ ++A++RF+ +D+ A+++ Sbjct: 279 LSFGGRLDVPKQ-SSQRGMTARERFQNLDKKASSE 312
>sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subunit (p41-ARC) Length = 377 Score = 160 bits (406), Expect = 2e-39 Identities = 86/233 (36%), Positives = 133/233 (57%), Gaps = 17/233 (7%) Frame = +1 Query: 1 TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180 TFVRWSP E+KFAVGS A++IS+C F+ ND+WVSKHLK+ + STI LDWHP+N +LA Sbjct: 104 TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 Query: 181 GSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIW 360 G D V A ++ D + S WG++L FN++ E G GW+H++ FS GN L + Sbjct: 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSG-GWVHAVGFSPSGNALAY 222 Query: 361 STHSSTICVATVSGSQQPP-SVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDKD 537 + H S++ +A S +QPP ++ + + LP +L+WA + ++ AG++ P + ++ Sbjct: 223 AGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNES 282 Query: 538 ------QLKLGTSLDS----------KEELNTNATLSAKDRFRQIDRIATADS 648 L GTS S +EE + + + FR +D ++ S Sbjct: 283 GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQS 335
>sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subunit (p41-ARC) Length = 384 Score = 127 bits (318), Expect = 4e-29 Identities = 73/205 (35%), Positives = 111/205 (54%), Gaps = 4/205 (1%) Frame = +1 Query: 1 TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180 T V W+P KFAVGSSA++I++C ++ N++WVSKH+KK I STI CL WH + +LA Sbjct: 111 TSVTWAPNGYKFAVGSSARIIAVCYYEHENNWWVSKHIKKPIKSTINCLSWHANGVLLAA 170 Query: 181 GSTDFHVRVYCALLKSHDVASKE----SNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGN 348 G TD +RV+ +K D SKE S WG K F L+ E G +IH + + + Sbjct: 171 GGTDGFMRVFSGFIKGLD--SKESVAGSPWGQKFPFGCLIREWYQG-SYIHDVEWRSQME 227 Query: 349 KLIWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIST 528 ++ + H T+ V Q P + + LP+ +LVW + ++ G+ C P S Sbjct: 228 RIAYVAHDGTLNVV----DYQSPVQSVNAPEGLPYRSLVWINDHEIVCGGYSCHPVLFSE 283 Query: 529 DKDQLKLGTSLDSKEELNTNATLSA 603 + K +LD K + N ++ L+A Sbjct: 284 ASEGWKFAKNLD-KSDNNKSSALTA 307
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 Length = 1526 Score = 41.6 bits (96), Expect = 0.002 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 24/158 (15%) Frame = +1 Query: 7 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186 V +SP FA G S ++ T + K NS + + + D +LA GS Sbjct: 870 VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCK----GHNSWVNSVGFSQDGKMLASGS 925 Query: 187 TDFHVRVY-------CALLKSHD--------------VASKESNWGTKL---TFNSLLWE 294 D VR++ K H +AS S+ +L + L+ Sbjct: 926 DDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYI 985 Query: 295 SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 408 +G GW++S+AF+ DG+ L + T+ + +S SQ Sbjct: 986 FQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQ 1023
Score = 39.7 bits (91), Expect = 0.008 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 24/158 (15%) Frame = +1 Query: 7 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186 V ++P + A GSS + + + +++ + +NS + ++PD ++LA GS Sbjct: 1206 VVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVV----FNPDGSMLASGS 1261 Query: 187 TDFHVRVY-CALLKSHDVASKESNWGTKLTFNS--------------LLWES-------- 297 +D VR++ + K +NW + FN LWE Sbjct: 1262 SDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHT 1321 Query: 298 -EGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 408 +G W+ S+ FS DG L + T+ + ++S + Sbjct: 1322 FQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGE 1359
Score = 35.4 bits (80), Expect = 0.15 Identities = 31/134 (23%), Positives = 59/134 (44%) Frame = +1 Query: 7 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186 V +SP A G +++ + + N + + S + L + P+ LA GS Sbjct: 1080 VVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQ----GYTSWVRFLVFSPNGVTLANGS 1135 Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366 +D VR++ D++SK+ L+ +G W++++AFS DG L + Sbjct: 1136 SDQIVRLW-------DISSKKC-----------LYTLQGHTNWVNAVAFSPDGATLASGS 1177 Query: 367 HSSTICVATVSGSQ 408 T+ + +S S+ Sbjct: 1178 GDQTVRLWDISSSK 1191
Score = 34.3 bits (77), Expect = 0.34 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%) Frame = +1 Query: 4 FVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACG 183 F+ +SP A GSS +++ + + + + +N+ + PD LA G Sbjct: 1121 FLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVA----FSPDGATLASG 1176 Query: 184 STDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKL--- 354 S D VR++ D++S + L+ +G W++S+ F+ DG+ L Sbjct: 1177 SGDQTVRLW-------DISSSKC-----------LYILQGHTSWVNSVVFNPDGSTLASG 1218 Query: 355 -------IWSTHSSTICVATVSG 402 +W +SS C+ T G Sbjct: 1219 SSDQTVRLWEINSSK-CLCTFQG 1240
Score = 33.5 bits (75), Expect = 0.57 Identities = 30/134 (22%), Positives = 51/134 (38%) Frame = +1 Query: 7 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186 V +SP A GS + + + S + + + S I + PD +LA GS Sbjct: 1332 VTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVI----FSPDGAILASGS 1387 Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366 D VR++ ++ L+ +G W+ SI FS DG L + Sbjct: 1388 GDQTVRLW------------------SISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGS 1429 Query: 367 HSSTICVATVSGSQ 408 T+ + +S + Sbjct: 1430 DDQTVRLWNISSGE 1443
>sp|Q93847|YZLL_CAEEL Hypothetical WD-repeat protein K04G11.4 IN chromosome X Length = 395 Score = 41.2 bits (95), Expect = 0.003 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Frame = +1 Query: 28 NKFAVGSSAKLISICS-------FDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186 N+F+ S +KLI CS FD ++ V K LK + N C ++P ++A GS Sbjct: 152 NEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCV-KTLKGHTNYVFCCC-FNPSGTLIASGS 209 Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366 D +R++CA + + S G + +S+ + +G + + S DG IW + Sbjct: 210 FDETIRIWCA----RNGNTIFSIPGHEDPVSSVCFNRDGA----YLASGSYDGIVRIWDS 261 Query: 367 HSSTICVATVSGSQQP--------PSVKMILMDNLPFLTLVW 468 + T CV T+ + P P+ K IL NL +W Sbjct: 262 TTGT-CVKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLW 302
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,327,416 Number of Sequences: 369166 Number of extensions: 1850399 Number of successful extensions: 4661 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4629 length of database: 68,354,980 effective HSP length: 107 effective length of database: 48,588,335 effective search space used: 6267895215 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)