Planarian EST Database


Dr_sW_022_N05

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_022_N05
         (711 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9R0Q6|ARC1A_MOUSE  Actin-related protein 2/3 complex sub...   194   2e-49
sp|Q92747|ARC1A_HUMAN  Actin-related protein 2/3 complex sub...   193   4e-49
sp|Q99PD4|ARC1A_RAT  Actin-related protein 2/3 complex subun...   192   7e-49
sp|O15143|ARC1B_HUMAN  Actin-related protein 2/3 complex sub...   185   9e-47
sp|O88656|ARC1B_RAT  Actin-related protein 2/3 complex subun...   185   1e-46
sp|Q9WV32|ARC1B_MOUSE  Actin-related protein 2/3 complex sub...   179   8e-45
sp|P78774|ARPC1_SCHPO  Probable ARP2/3 complex 41 kDa subuni...   160   2e-39
sp|P38328|ARPC1_YEAST  Probable ARP2/3 complex 41 kDa subuni...   127   4e-29
sp|Q8YRI1|YY46_ANASP  Hypothetical WD-repeat protein alr3466       42   0.002
sp|Q93847|YZLL_CAEEL  Hypothetical WD-repeat protein K04G11....    41   0.003
>sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
           (Sid 329)
          Length = 370

 Score =  194 bits (493), Expect = 2e-49
 Identities = 100/221 (45%), Positives = 141/221 (63%), Gaps = 4/221 (1%)
 Frame = +1

Query: 1   TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180
           TFV+WSPLENKFAVGS A+LIS+C F++ ND+WVSKH+KK I ST+  LDWHP+N +LA 
Sbjct: 100 TFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAA 159

Query: 181 GSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKL 354
           GS DF  RV+ A +K  D     + WG+K+ F  L+ E    G  GW+H ++FS  GN+L
Sbjct: 160 GSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGNRL 219

Query: 355 IWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TD 531
            W +H ST+ VA  S S Q   V  +  + LP L++ + + N+V+ AGHDC P   +  D
Sbjct: 220 AWVSHDSTVSVADASKSVQ---VSTLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDD 276

Query: 532 KDQLKLGTSLD-SKEELNTNATLSAKDRFRQIDRIATADSQ 651
           +  L   + LD  K+ +  N  +SA +RFR +D+ AT + +
Sbjct: 277 RGCLTFVSKLDVPKQSIQRN--MSAMERFRNMDKRATTEDR 315
>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
          Length = 370

 Score =  193 bits (490), Expect = 4e-49
 Identities = 100/221 (45%), Positives = 141/221 (63%), Gaps = 4/221 (1%)
 Frame = +1

Query: 1   TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180
           TFV+WSPLENKFAVGS A+LIS+C F+  ND+WVSKH+KK I ST+  LDWHP+N +LA 
Sbjct: 100 TFVKWSPLENKFAVGSGARLISVCYFEAENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAA 159

Query: 181 GSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKL 354
           GS DF  RV+ A +K  D     + WG+K+ F  L+ E    G  GW+H ++FS  G++L
Sbjct: 160 GSCDFKCRVFSAYIKEVDEKKASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRL 219

Query: 355 IWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFT-ISTD 531
            W +H ST+ VA  S S Q  ++K    + LP L++ + + N+V+ AGHDC P   I  D
Sbjct: 220 AWVSHDSTVSVADASKSVQVSTLK---TEFLPLLSVSFVSENSVVAAGHDCCPMLFIYDD 276

Query: 532 KDQLKLGTSLD-SKEELNTNATLSAKDRFRQIDRIATADSQ 651
           +  L   + LD  K+ +  N  +SA +RFR +D+ AT + +
Sbjct: 277 RGCLTFVSKLDIPKQSIQRN--MSAMERFRNMDKRATTEDR 315

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 76  FDTNNDFWVSKHLKKNINSTITCLDWHP-DNNVLACGS 186
           +  N   WV  H  K  N  IT +DW P  + ++ CG+
Sbjct: 35  YKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGA 72
>sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A
          Length = 370

 Score =  192 bits (488), Expect = 7e-49
 Identities = 99/221 (44%), Positives = 141/221 (63%), Gaps = 4/221 (1%)
 Frame = +1

Query: 1   TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180
           TFV+WSPLENKFAVGS A+LIS+C F++ ND+WVSKH+KK I ST+  LDWHP+N +LA 
Sbjct: 100 TFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAA 159

Query: 181 GSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKL 354
           GS DF  RV+ A +K  D     + WG+K+ F  L+ E    G  GW+H ++FS  G++L
Sbjct: 160 GSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRL 219

Query: 355 IWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TD 531
            W +H ST+ VA  S S Q   V  +  + LP L++ + + N+V+ AGHDC P   +  D
Sbjct: 220 AWVSHDSTVSVADASKSVQ---VSTLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDD 276

Query: 532 KDQLKLGTSLD-SKEELNTNATLSAKDRFRQIDRIATADSQ 651
           +  L   + LD  K+ +  N  +SA +RFR +D+ AT + +
Sbjct: 277 RGCLTFVSKLDVPKQSIQRN--MSAMERFRNMDKRATTEDR 315
>sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
           subunit) (p41-ARC)
          Length = 372

 Score =  185 bits (470), Expect = 9e-47
 Identities = 86/215 (40%), Positives = 135/215 (62%), Gaps = 2/215 (0%)
 Frame = +1

Query: 7   VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186
           VRW+P ENKFAVGS +++ISIC F+  ND+WV KH+KK I ST+  LDWHP+N +LA GS
Sbjct: 102 VRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGS 161

Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366
            DF  R++ A +K  +     + WG+K+ F  L++ES    GW+H + FS  G+++ W +
Sbjct: 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVS 221

Query: 367 HSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQ 540
           H ST+C+A    + +  +V  +  + LP L L +   N+++ AGHDC P  FT       
Sbjct: 222 HDSTVCLA---DADKKMAVATLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGM 278

Query: 541 LKLGTSLDSKEELNTNATLSAKDRFRQIDRIATAD 645
           L  G  LD  ++ ++   L+A++RF+ +D+ A+++
Sbjct: 279 LSFGGRLDVPKQ-SSQRGLTARERFQNLDKKASSE 312
>sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
           subunit) (p41-ARC)
          Length = 372

 Score =  185 bits (469), Expect = 1e-46
 Identities = 85/215 (39%), Positives = 135/215 (62%), Gaps = 2/215 (0%)
 Frame = +1

Query: 7   VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186
           VRW+P ENKFAVGS +++ISIC F+  ND+WV KH+KK I ST+  LDWHP+N +LA GS
Sbjct: 102 VRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGS 161

Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366
            DF  R++ A +K  +     + WG+K+ F  L++ES    GW+H + FS  G+++ W +
Sbjct: 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAGGSRVAWVS 221

Query: 367 HSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQ 540
           H ST+C+     +++  +V  +  + LP L + +   N+++ AGHDC P  FT       
Sbjct: 222 HDSTVCLV---DAEKKMAVATLASETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGT 278

Query: 541 LKLGTSLDSKEELNTNATLSAKDRFRQIDRIATAD 645
           L  G  LD  ++ N+   L+A++RF+ +D+ A+++
Sbjct: 279 LSFGGRLDVPKQ-NSQRGLTARERFQNLDKKASSE 312
>sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
           subunit) (p41-ARC)
          Length = 372

 Score =  179 bits (453), Expect = 8e-45
 Identities = 82/215 (38%), Positives = 133/215 (61%), Gaps = 2/215 (0%)
 Frame = +1

Query: 7   VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186
           VRW+P ENKF VGS +++ISIC F+  ND+WV KH+KK I ST+  LDWHP+N +LA GS
Sbjct: 102 VRWAPNENKFRVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGS 161

Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366
            DF  R++ A +K  +     + WG+K+ F  L++ES    GW+H + FS  G+++ W +
Sbjct: 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVS 221

Query: 367 HSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQ 540
           H ST+C+     + +  +V  +  + LP L + +   N+++ AGHDC P  FT       
Sbjct: 222 HDSTVCLV---DADKKMAVATLASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVT 278

Query: 541 LKLGTSLDSKEELNTNATLSAKDRFRQIDRIATAD 645
           L  G  LD  ++ ++   ++A++RF+ +D+ A+++
Sbjct: 279 LSFGGRLDVPKQ-SSQRGMTARERFQNLDKKASSE 312
>sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
          Length = 377

 Score =  160 bits (406), Expect = 2e-39
 Identities = 86/233 (36%), Positives = 133/233 (57%), Gaps = 17/233 (7%)
 Frame = +1

Query: 1   TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180
           TFVRWSP E+KFAVGS A++IS+C F+  ND+WVSKHLK+ + STI  LDWHP+N +LA 
Sbjct: 104 TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163

Query: 181 GSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIW 360
           G  D    V  A ++  D   + S WG++L FN++  E   G GW+H++ FS  GN L +
Sbjct: 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSG-GWVHAVGFSPSGNALAY 222

Query: 361 STHSSTICVATVSGSQQPP-SVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDKD 537
           + H S++ +A  S  +QPP ++  + +  LP  +L+WA  + ++ AG++  P  +  ++ 
Sbjct: 223 AGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNES 282

Query: 538 ------QLKLGTSLDS----------KEELNTNATLSAKDRFRQIDRIATADS 648
                  L  GTS  S          +EE    +  + +  FR +D   ++ S
Sbjct: 283 GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQS 335
>sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
          Length = 384

 Score =  127 bits (318), Expect = 4e-29
 Identities = 73/205 (35%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
 Frame = +1

Query: 1   TFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLAC 180
           T V W+P   KFAVGSSA++I++C ++  N++WVSKH+KK I STI CL WH +  +LA 
Sbjct: 111 TSVTWAPNGYKFAVGSSARIIAVCYYEHENNWWVSKHIKKPIKSTINCLSWHANGVLLAA 170

Query: 181 GSTDFHVRVYCALLKSHDVASKE----SNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGN 348
           G TD  +RV+   +K  D  SKE    S WG K  F  L+ E   G  +IH + + +   
Sbjct: 171 GGTDGFMRVFSGFIKGLD--SKESVAGSPWGQKFPFGCLIREWYQG-SYIHDVEWRSQME 227

Query: 349 KLIWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIST 528
           ++ +  H  T+ V       Q P   +   + LP+ +LVW   + ++  G+ C P   S 
Sbjct: 228 RIAYVAHDGTLNVV----DYQSPVQSVNAPEGLPYRSLVWINDHEIVCGGYSCHPVLFSE 283

Query: 529 DKDQLKLGTSLDSKEELNTNATLSA 603
             +  K   +LD K + N ++ L+A
Sbjct: 284 ASEGWKFAKNLD-KSDNNKSSALTA 307
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
          Length = 1526

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 24/158 (15%)
 Frame = +1

Query: 7    VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186
            V +SP    FA G S  ++      T  +    K      NS +  + +  D  +LA GS
Sbjct: 870  VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCK----GHNSWVNSVGFSQDGKMLASGS 925

Query: 187  TDFHVRVY-------CALLKSHD--------------VASKESNWGTKL---TFNSLLWE 294
             D  VR++           K H               +AS  S+   +L   +    L+ 
Sbjct: 926  DDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYI 985

Query: 295  SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 408
             +G  GW++S+AF+ DG+ L   +   T+ +  +S SQ
Sbjct: 986  FQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQ 1023

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 24/158 (15%)
 Frame = +1

Query: 7    VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186
            V ++P  +  A GSS + + +   +++      +     +NS +    ++PD ++LA GS
Sbjct: 1206 VVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVV----FNPDGSMLASGS 1261

Query: 187  TDFHVRVY-CALLKSHDVASKESNWGTKLTFNS--------------LLWES-------- 297
            +D  VR++  +  K        +NW   + FN                LWE         
Sbjct: 1262 SDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHT 1321

Query: 298  -EGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 408
             +G   W+ S+ FS DG  L   +   T+ + ++S  +
Sbjct: 1322 FQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGE 1359

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 31/134 (23%), Positives = 59/134 (44%)
 Frame = +1

Query: 7    VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186
            V +SP     A G   +++ +    + N  +  +       S +  L + P+   LA GS
Sbjct: 1080 VVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQ----GYTSWVRFLVFSPNGVTLANGS 1135

Query: 187  TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366
            +D  VR++       D++SK+            L+  +G   W++++AFS DG  L   +
Sbjct: 1136 SDQIVRLW-------DISSKKC-----------LYTLQGHTNWVNAVAFSPDGATLASGS 1177

Query: 367  HSSTICVATVSGSQ 408
               T+ +  +S S+
Sbjct: 1178 GDQTVRLWDISSSK 1191

 Score = 34.3 bits (77), Expect = 0.34
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
 Frame = +1

Query: 4    FVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACG 183
            F+ +SP     A GSS +++ +    +    +  +     +N+      + PD   LA G
Sbjct: 1121 FLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVA----FSPDGATLASG 1176

Query: 184  STDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKL--- 354
            S D  VR++       D++S +            L+  +G   W++S+ F+ DG+ L   
Sbjct: 1177 SGDQTVRLW-------DISSSKC-----------LYILQGHTSWVNSVVFNPDGSTLASG 1218

Query: 355  -------IWSTHSSTICVATVSG 402
                   +W  +SS  C+ T  G
Sbjct: 1219 SSDQTVRLWEINSSK-CLCTFQG 1240

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 30/134 (22%), Positives = 51/134 (38%)
 Frame = +1

Query: 7    VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186
            V +SP     A GS  + + + S  +    +        + S I    + PD  +LA GS
Sbjct: 1332 VTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVI----FSPDGAILASGS 1387

Query: 187  TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366
             D  VR++                   ++    L+  +G   W+ SI FS DG  L   +
Sbjct: 1388 GDQTVRLW------------------SISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGS 1429

Query: 367  HSSTICVATVSGSQ 408
               T+ +  +S  +
Sbjct: 1430 DDQTVRLWNISSGE 1443
>sp|Q93847|YZLL_CAEEL Hypothetical WD-repeat protein K04G11.4 IN chromosome X
          Length = 395

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
 Frame = +1

Query: 28  NKFAVGSSAKLISICS-------FDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 186
           N+F+  S +KLI  CS       FD ++   V K LK + N    C  ++P   ++A GS
Sbjct: 152 NEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCV-KTLKGHTNYVFCCC-FNPSGTLIASGS 209

Query: 187 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 366
            D  +R++CA     +  +  S  G +   +S+ +  +G     +  + S DG   IW +
Sbjct: 210 FDETIRIWCA----RNGNTIFSIPGHEDPVSSVCFNRDGA----YLASGSYDGIVRIWDS 261

Query: 367 HSSTICVATVSGSQQP--------PSVKMILMDNLPFLTLVW 468
            + T CV T+   + P        P+ K IL  NL     +W
Sbjct: 262 TTGT-CVKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLW 302
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,327,416
Number of Sequences: 369166
Number of extensions: 1850399
Number of successful extensions: 4661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4629
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)