Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B22
(822 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex sub... 228 2e-59
sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex sub... 227 3e-59
sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subun... 226 6e-59
sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex sub... 223 5e-58
sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subun... 222 8e-58
sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex sub... 216 6e-56
sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subuni... 183 4e-46
sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subuni... 146 6e-35
sp|P25382|YCW2_YEAST Hypothetical WD-repeat protein YCR072C 42 0.002
sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 42 0.003
>sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
(Sid 329)
Length = 370
Score = 228 bits (581), Expect = 2e-59
Identities = 116/276 (42%), Positives = 170/276 (61%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 ATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLA 182
ATFV+WSPLENKFAVGS A+LIS+C F++ ND+WVSKH+KK I ST+ LDWHP+N +LA
Sbjct: 99 ATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLA 158
Query: 183 CGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNK 356
GS DF RV+ A +K D + WG+K+ F L+ E G GW+H ++FS GN+
Sbjct: 159 AGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGNR 218
Query: 357 LIWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-T 533
L W +H ST+ VA S S Q V + + LP L++ + + N+V+ AGHDC P +
Sbjct: 219 LAWVSHDSTVSVADASKSVQ---VSTLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYD 275
Query: 534 DKDQLKLGTSLD-SKEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIM 710
D+ L + LD K+ + N +SA +RFR +D+ AT + ++ + + H+N+I ++ I
Sbjct: 276 DRGCLTFVSKLDVPKQSIQRN--MSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIY 333
Query: 711 KGSNGSAQVLSTIGRDGQLILWDLKTLSQKMSDLKI 818
+ + T G DG + +WD KTL + L+I
Sbjct: 334 EVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRI 369
>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
Length = 370
Score = 227 bits (578), Expect = 3e-59
Identities = 116/276 (42%), Positives = 170/276 (61%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 ATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLA 182
ATFV+WSPLENKFAVGS A+LIS+C F+ ND+WVSKH+KK I ST+ LDWHP+N +LA
Sbjct: 99 ATFVKWSPLENKFAVGSGARLISVCYFEAENDWWVSKHIKKPIRSTVLSLDWHPNNVLLA 158
Query: 183 CGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNK 356
GS DF RV+ A +K D + WG+K+ F L+ E G GW+H ++FS G++
Sbjct: 159 AGSCDFKCRVFSAYIKEVDEKKASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSR 218
Query: 357 LIWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFT-IST 533
L W +H ST+ VA S S Q ++K + LP L++ + + N+V+ AGHDC P I
Sbjct: 219 LAWVSHDSTVSVADASKSVQVSTLK---TEFLPLLSVSFVSENSVVAAGHDCCPMLFIYD 275
Query: 534 DKDQLKLGTSLD-SKEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIM 710
D+ L + LD K+ + N +SA +RFR +D+ AT + ++ + + H+N+I ++ I
Sbjct: 276 DRGCLTFVSKLDIPKQSIQRN--MSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIY 333
Query: 711 KGSNGSAQVLSTIGRDGQLILWDLKTLSQKMSDLKI 818
+ + T G DG + +WD KTL + L+I
Sbjct: 334 EVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRI 369
Score = 30.0 bits (66), Expect = 8.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 81 FDTNNDFWVSKHLKKNINSTITCLDWHP-DNNVLACGS 191
+ N WV H K N IT +DW P + ++ CG+
Sbjct: 35 YKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGA 72
>sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A
Length = 370
Score = 226 bits (576), Expect = 6e-59
Identities = 115/276 (41%), Positives = 170/276 (61%), Gaps = 4/276 (1%)
Frame = +3
Query: 3 ATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLA 182
ATFV+WSPLENKFAVGS A+LIS+C F++ ND+WVSKH+KK I ST+ LDWHP+N +LA
Sbjct: 99 ATFVKWSPLENKFAVGSGARLISVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLA 158
Query: 183 CGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNK 356
GS DF RV+ A +K D + WG+K+ F L+ E G GW+H ++FS G++
Sbjct: 159 AGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSR 218
Query: 357 LIWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-T 533
L W +H ST+ VA S S Q V + + LP L++ + + N+V+ AGHDC P +
Sbjct: 219 LAWVSHDSTVSVADASKSVQ---VSTLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYD 275
Query: 534 DKDQLKLGTSLD-SKEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIM 710
D+ L + LD K+ + N +SA +RFR +D+ AT + ++ + + H+N+I ++ I
Sbjct: 276 DRGCLTFVSKLDVPKQSIQRN--MSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIY 333
Query: 711 KGSNGSAQVLSTIGRDGQLILWDLKTLSQKMSDLKI 818
+ + T G DG + +WD KTL + L+I
Sbjct: 334 EVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRI 369
>sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 223 bits (568), Expect = 5e-58
Identities = 105/278 (37%), Positives = 169/278 (60%), Gaps = 5/278 (1%)
Frame = +3
Query: 3 ATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLA 182
A VRW+P ENKFAVGS +++ISIC F+ ND+WV KH+KK I ST+ LDWHP+N +LA
Sbjct: 99 ARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLA 158
Query: 183 CGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLI 362
GS DF R++ A +K + + WG+K+ F L++ES GW+H + FS G+++
Sbjct: 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVA 218
Query: 363 WSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTD 536
W +H ST+C+A + + +V + + LP L L + N+++ AGHDC P FT
Sbjct: 219 WVSHDSTVCLA---DADKKMAVATLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAA 275
Query: 537 KDQLKLGTSLDSKEELNTNATLSAKDRFRQIDRIATADSNDSI---INSKHKNAINEIRI 707
L G LD ++ ++ L+A++RF+ +D+ A+++ + ++S HKN++++I +
Sbjct: 276 AGMLSFGGRLDVPKQ-SSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISV 334
Query: 708 MKGSNGSAQVLSTIGRDGQLILWDLKTLSQKMSDLKIQ 821
+ G T G DG + +WD+K+L + DLKI+
Sbjct: 335 LSGGKAKCSQFCTTGMDGGMSIWDVKSLESALKDLKIK 372
>sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 222 bits (566), Expect = 8e-58
Identities = 104/278 (37%), Positives = 169/278 (60%), Gaps = 5/278 (1%)
Frame = +3
Query: 3 ATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLA 182
A VRW+P ENKFAVGS +++ISIC F+ ND+WV KH+KK I ST+ LDWHP+N +LA
Sbjct: 99 ARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLA 158
Query: 183 CGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLI 362
GS DF R++ A +K + + WG+K+ F L++ES GW+H + FS G+++
Sbjct: 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAGGSRVA 218
Query: 363 WSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTD 536
W +H ST+C+ +++ +V + + LP L + + N+++ AGHDC P FT
Sbjct: 219 WVSHDSTVCLV---DAEKKMAVATLASETLPLLAITFITENSLVAAGHDCFPVLFTYDNA 275
Query: 537 KDQLKLGTSLDSKEELNTNATLSAKDRFRQIDRIATADSNDSI---INSKHKNAINEIRI 707
L G LD ++ N+ L+A++RF+ +D+ A+++ + ++S HKN++++I +
Sbjct: 276 AGTLSFGGRLDVPKQ-NSQRGLTARERFQNLDKKASSEGGAATGAGLDSLHKNSVSQISV 334
Query: 708 MKGSNGSAQVLSTIGRDGQLILWDLKTLSQKMSDLKIQ 821
+ G T G DG + +WD+K+L + DLKI+
Sbjct: 335 LSGGKAKCSQFCTTGMDGGMSIWDVKSLESALKDLKIR 372
>sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 216 bits (550), Expect = 6e-56
Identities = 101/278 (36%), Positives = 167/278 (60%), Gaps = 5/278 (1%)
Frame = +3
Query: 3 ATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLA 182
A VRW+P ENKF VGS +++ISIC F+ ND+WV KH+KK I ST+ LDWHP+N +LA
Sbjct: 99 ARCVRWAPNENKFRVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLA 158
Query: 183 CGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLI 362
GS DF R++ A +K + + WG+K+ F L++ES GW+H + FS G+++
Sbjct: 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVA 218
Query: 363 WSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTD 536
W +H ST+C+ + + +V + + LP L + + N+++ AGHDC P FT
Sbjct: 219 WVSHDSTVCLV---DADKKMAVATLASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNA 275
Query: 537 KDQLKLGTSLDSKEELNTNATLSAKDRFRQIDRIATADSNDSI---INSKHKNAINEIRI 707
L G LD ++ ++ ++A++RF+ +D+ A+++ + ++S HKN++++I +
Sbjct: 276 AVTLSFGGRLDVPKQ-SSQRGMTARERFQNLDKKASSEGGAATGAGLDSLHKNSVSQISV 334
Query: 708 MKGSNGSAQVLSTIGRDGQLILWDLKTLSQKMSDLKIQ 821
+ G T G DG + +WD+K+L + DLKI+
Sbjct: 335 LSGGKAKCSQFCTTGMDGGMSIWDVKSLESALKDLKIK 372
>sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
Length = 377
Score = 183 bits (465), Expect = 4e-46
Identities = 100/277 (36%), Positives = 158/277 (57%), Gaps = 17/277 (6%)
Frame = +3
Query: 3 ATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLA 182
ATFVRWSP E+KFAVGS A++IS+C F+ ND+WVSKHLK+ + STI LDWHP+N +LA
Sbjct: 103 ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162
Query: 183 CGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLI 362
G D V A ++ D + S WG++L FN++ E G GW+H++ FS GN L
Sbjct: 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSG-GWVHAVGFSPSGNALA 221
Query: 363 WSTHSSTICVATVSGSQQPP-SVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDK 539
++ H S++ +A S +QPP ++ + + LP +L+WA + ++ AG++ P + ++
Sbjct: 222 YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNE 281
Query: 540 D------QLKLGTSLDS----------KEELNTNATLSAKDRFRQIDRIATADSNDSIIN 671
L GTS S +EE + + + FR +D ++ S S +
Sbjct: 282 SGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISS-LP 340
Query: 672 SKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDL 782
+ H+N I +R G+ G+ ++ G DG+++LW L
Sbjct: 341 TVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377
>sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
Length = 384
Score = 146 bits (369), Expect = 6e-35
Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 24/284 (8%)
Frame = +3
Query: 3 ATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLA 182
AT V W+P KFAVGSSA++I++C ++ N++WVSKH+KK I STI CL WH + +LA
Sbjct: 110 ATSVTWAPNGYKFAVGSSARIIAVCYYEHENNWWVSKHIKKPIKSTINCLSWHANGVLLA 169
Query: 183 CGSTDFHVRVYCALLKSHDVASKE----SNWGTKLTFNSLLWESEGGLGWIHSIAFSNDG 350
G TD +RV+ +K D SKE S WG K F L+ E G +IH + + +
Sbjct: 170 AGGTDGFMRVFSGFIKGLD--SKESVAGSPWGQKFPFGCLIREWYQG-SYIHDVEWRSQM 226
Query: 351 NKLIWSTHSSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS 530
++ + H T+ V Q P + + LP+ +LVW + ++ G+ C P S
Sbjct: 227 ERIAYVAHDGTLNVV----DYQSPVQSVNAPEGLPYRSLVWINDHEIVCGGYSCHPVLFS 282
Query: 531 TDKDQLKLGTSLDSKEELNTNAT--------------------LSAKDRFRQIDRIATAD 650
+ K +LD + ++A +SA +F+++D
Sbjct: 283 EASEGWKFAKNLDKSDNNKSSALTASGNTDELSGNNDESSTFGISALRKFKELDLKGKVS 342
Query: 651 SNDSIINSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDL 782
++ + S H+NAI E+R SNG +S+ G DG+++++ +
Sbjct: 343 TD--VQESAHENAIVELRPFAESNGQITQVSSCGLDGKIVIYTI 384
>sp|P25382|YCW2_YEAST Hypothetical WD-repeat protein YCR072C
Length = 515
Score = 42.0 bits (97), Expect = 0.002
Identities = 59/256 (23%), Positives = 94/256 (36%), Gaps = 9/256 (3%)
Frame = +3
Query: 39 FAVGSSAKLISICSFDTNN----DFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHV 206
FA +S+++++ +T D H K + + C+ W PD V+A GS D +
Sbjct: 151 FAPHTSSRMVTGAGDNTARIWDCDTQTPMHTLKGHYNWVLCVSWSPDGEVIATGSMDNTI 210
Query: 207 RVYCALLKS----HDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTH 374
R++ KS D S W T L++ + G + S S DG IW T
Sbjct: 211 RLWDP--KSGQCLGDALRGHSKWITSLSWEPIHLVKPGSKPRLAS--SSKDGTIKIWDT- 265
Query: 375 SSTICVATVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDKDQLKL 554
S +C T+SG S + W + HD + Q +
Sbjct: 266 VSRVCQYTMSGHTNSVS------------CVKWGGQGLLYSGSHDRT-VRVWDINSQGRC 312
Query: 555 GTSLDSKEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAI-NEIRIMKGSNGSA 731
L S + +LS D +I S K A+ N +I K + S
Sbjct: 313 INILKSHAHWVNHLSLST-DYALRIGAFDHTGKKPSTPEEAQKKALENYEKICKKNGNSE 371
Query: 732 QVLSTIGRDGQLILWD 779
+++ T D + LW+
Sbjct: 372 EMMVTASDDYTMFLWN 387
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 41.6 bits (96), Expect = 0.003
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 24/158 (15%)
Frame = +3
Query: 12 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 191
V +SP FA G S ++ T + K NS + + + D +LA GS
Sbjct: 870 VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCK----GHNSWVNSVGFSQDGKMLASGS 925
Query: 192 TDFHVRVY-------CALLKSHD--------------VASKESNWGTKL---TFNSLLWE 299
D VR++ K H +AS S+ +L + L+
Sbjct: 926 DDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYI 985
Query: 300 SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 413
+G GW++S+AF+ DG+ L + T+ + +S SQ
Sbjct: 986 FQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQ 1023
Score = 39.7 bits (91), Expect = 0.010
Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 24/158 (15%)
Frame = +3
Query: 12 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 191
V ++P + A GSS + + + +++ + +NS + ++PD ++LA GS
Sbjct: 1206 VVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVV----FNPDGSMLASGS 1261
Query: 192 TDFHVRVY-CALLKSHDVASKESNWGTKLTFNS--------------LLWES-------- 302
+D VR++ + K +NW + FN LWE
Sbjct: 1262 SDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHT 1321
Query: 303 -EGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 413
+G W+ S+ FS DG L + T+ + ++S +
Sbjct: 1322 FQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGE 1359
Score = 35.4 bits (80), Expect = 0.19
Identities = 31/134 (23%), Positives = 59/134 (44%)
Frame = +3
Query: 12 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 191
V +SP A G +++ + + N + + S + L + P+ LA GS
Sbjct: 1080 VVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQ----GYTSWVRFLVFSPNGVTLANGS 1135
Query: 192 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 371
+D VR++ D++SK+ L+ +G W++++AFS DG L +
Sbjct: 1136 SDQIVRLW-------DISSKKC-----------LYTLQGHTNWVNAVAFSPDGATLASGS 1177
Query: 372 HSSTICVATVSGSQ 413
T+ + +S S+
Sbjct: 1178 GDQTVRLWDISSSK 1191
Score = 34.3 bits (77), Expect = 0.42
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Frame = +3
Query: 9 FVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACG 188
F+ +SP A GSS +++ + + + + +N+ + PD LA G
Sbjct: 1121 FLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVA----FSPDGATLASG 1176
Query: 189 STDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKL--- 359
S D VR++ D++S + L+ +G W++S+ F+ DG+ L
Sbjct: 1177 SGDQTVRLW-------DISSSKC-----------LYILQGHTSWVNSVVFNPDGSTLASG 1218
Query: 360 -------IWSTHSSTICVATVSG 407
+W +SS C+ T G
Sbjct: 1219 SSDQTVRLWEINSSK-CLCTFQG 1240
Score = 33.5 bits (75), Expect = 0.72
Identities = 30/134 (22%), Positives = 51/134 (38%)
Frame = +3
Query: 12 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 191
V +SP A GS + + + S + + + S I + PD +LA GS
Sbjct: 1332 VTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVI----FSPDGAILASGS 1387
Query: 192 TDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWST 371
D VR++ ++ L+ +G W+ SI FS DG L +
Sbjct: 1388 GDQTVRLW------------------SISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGS 1429
Query: 372 HSSTICVATVSGSQ 413
T+ + +S +
Sbjct: 1430 DDQTVRLWNISSGE 1443
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,177,053
Number of Sequences: 369166
Number of extensions: 2128706
Number of successful extensions: 5642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5597
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)