Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H16
(890 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex sub... 271 1e-72
sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex sub... 270 3e-72
sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subun... 270 5e-72
sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex sub... 263 6e-70
sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subun... 262 1e-69
sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex sub... 256 8e-68
sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subuni... 222 1e-57
sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subuni... 187 4e-47
sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 43 0.001
sp|Q8CGF6|WDR47_MOUSE WD-repeat protein 47 43 0.001
>sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
(Sid 329)
Length = 370
Score = 271 bits (694), Expect = 1e-72
Identities = 135/300 (45%), Positives = 193/300 (64%), Gaps = 4/300 (1%)
Frame = +2
Query: 2 KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
+IV+C DRNAYVW++ D WKP LVIL++NRAATFV+WSPLENKFAVGS A+LIS+C F
Sbjct: 66 RIVTCGADRNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYF 125
Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
++ ND+WVSKH+KK I ST+ LDWHP+N +LA GS DF RV+ A +K D + W
Sbjct: 126 ESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPW 185
Query: 362 GTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMI 535
G+K+ F L+ E G GW+H ++FS GN+L W +H ST+ VA S S Q V +
Sbjct: 186 GSKMPFGQLMSEFGGSGTGGWVHGVSFSASGNRLAWVSHDSTVSVADASKSVQ---VSTL 242
Query: 536 LMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TDKDQLKLGTSLD-SKEELNTNATLSAK 709
+ LP L++ + + N+V+ AGHDC P + D+ L + LD K+ + N +SA
Sbjct: 243 RTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDVPKQSIQRN--MSAM 300
Query: 710 DRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKTL 889
+RFR +D+ AT + ++ + + H+N+I ++ I + + T G DG + +WD KTL
Sbjct: 301 ERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTL 360
>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
Length = 370
Score = 270 bits (691), Expect = 3e-72
Identities = 135/300 (45%), Positives = 193/300 (64%), Gaps = 4/300 (1%)
Frame = +2
Query: 2 KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
+IV+C DRNAYVW++ D WKP LVIL++NRAATFV+WSPLENKFAVGS A+LIS+C F
Sbjct: 66 RIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYF 125
Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
+ ND+WVSKH+KK I ST+ LDWHP+N +LA GS DF RV+ A +K D + W
Sbjct: 126 EAENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKKASTPW 185
Query: 362 GTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMI 535
G+K+ F L+ E G GW+H ++FS G++L W +H ST+ VA S S Q ++K
Sbjct: 186 GSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVSTLK-- 243
Query: 536 LMDNLPFLTLVWAAPNTVIGAGHDCVPFT-ISTDKDQLKLGTSLD-SKEELNTNATLSAK 709
+ LP L++ + + N+V+ AGHDC P I D+ L + LD K+ + N +SA
Sbjct: 244 -TEFLPLLSVSFVSENSVVAAGHDCCPMLFIYDDRGCLTFVSKLDIPKQSIQRN--MSAM 300
Query: 710 DRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKTL 889
+RFR +D+ AT + ++ + + H+N+I ++ I + + T G DG + +WD KTL
Sbjct: 301 ERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTL 360
Score = 30.0 bits (66), Expect = 9.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 179 FDTNNDFWVSKHLKKNINSTITCLDWHP-DNNVLACGS 289
+ N WV H K N IT +DW P + ++ CG+
Sbjct: 35 YKKNGSQWVKAHELKEHNGHITGIDWAPKSDRIVTCGA 72
>sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A
Length = 370
Score = 270 bits (689), Expect = 5e-72
Identities = 134/300 (44%), Positives = 193/300 (64%), Gaps = 4/300 (1%)
Frame = +2
Query: 2 KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
+IV+C DRNAYVW++ D WKP LVIL++NRAATFV+WSPLENKFAVGS A+LIS+C F
Sbjct: 66 RIVTCGADRNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLISVCYF 125
Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
++ ND+WVSKH+KK I ST+ LDWHP+N +LA GS DF RV+ A +K D + W
Sbjct: 126 ESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPW 185
Query: 362 GTKLTFNSLLWE--SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMI 535
G+K+ F L+ E G GW+H ++FS G++L W +H ST+ VA S S Q V +
Sbjct: 186 GSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQ---VSTL 242
Query: 536 LMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TDKDQLKLGTSLD-SKEELNTNATLSAK 709
+ LP L++ + + N+V+ AGHDC P + D+ L + LD K+ + N +SA
Sbjct: 243 RTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDVPKQSIQRN--MSAM 300
Query: 710 DRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKTL 889
+RFR +D+ AT + ++ + + H+N+I ++ I + + T G DG + +WD KTL
Sbjct: 301 ERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTL 360
>sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 263 bits (671), Expect = 6e-70
Identities = 122/301 (40%), Positives = 190/301 (63%), Gaps = 5/301 (1%)
Frame = +2
Query: 2 KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
+IV+C TDRNAYVW ++WKP LVIL++NRAA VRW+P ENKFAVGS +++ISIC F
Sbjct: 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYF 125
Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
+ ND+WV KH+KK I ST+ LDWHP+N +LA GS DF R++ A +K + + W
Sbjct: 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185
Query: 362 GTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMILM 541
G+K+ F L++ES GW+H + FS G+++ W +H ST+C+A + + +V +
Sbjct: 186 GSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLA---DADKKMAVATLAS 242
Query: 542 DNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQLKLGTSLDSKEELNTNATLSAKDR 715
+ LP L L + N+++ AGHDC P FT L G LD ++ ++ L+A++R
Sbjct: 243 ETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQ-SSQRGLTARER 301
Query: 716 FRQIDRIATADSNDSI---INSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKT 886
F+ +D+ A+++ + ++S HKN++++I ++ G T G DG + +WD+K+
Sbjct: 302 FQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKS 361
Query: 887 L 889
L
Sbjct: 362 L 362
>sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 262 bits (669), Expect = 1e-69
Identities = 121/301 (40%), Positives = 190/301 (63%), Gaps = 5/301 (1%)
Frame = +2
Query: 2 KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
+IV+C TDRNAYVW ++WKP LVIL++NRAA VRW+P ENKFAVGS +++ISIC F
Sbjct: 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYF 125
Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
+ ND+WV KH+KK I ST+ LDWHP+N +LA GS DF R++ A +K + + W
Sbjct: 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185
Query: 362 GTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMILM 541
G+K+ F L++ES GW+H + FS G+++ W +H ST+C+ +++ +V +
Sbjct: 186 GSKMPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLV---DAEKKMAVATLAS 242
Query: 542 DNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQLKLGTSLDSKEELNTNATLSAKDR 715
+ LP L + + N+++ AGHDC P FT L G LD ++ N+ L+A++R
Sbjct: 243 ETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGTLSFGGRLDVPKQ-NSQRGLTARER 301
Query: 716 FRQIDRIATADSNDSI---INSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKT 886
F+ +D+ A+++ + ++S HKN++++I ++ G T G DG + +WD+K+
Sbjct: 302 FQNLDKKASSEGGAATGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKS 361
Query: 887 L 889
L
Sbjct: 362 L 362
>sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 256 bits (653), Expect = 8e-68
Identities = 118/301 (39%), Positives = 188/301 (62%), Gaps = 5/301 (1%)
Frame = +2
Query: 2 KIVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSF 181
+IV+C TDRNAYVW ++WKP LVIL++NRAA VRW+P ENKF VGS +++ISIC F
Sbjct: 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFRVGSGSRVISICYF 125
Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNW 361
+ ND+WV KH+KK I ST+ LDWHP+N +LA GS DF R++ A +K + + W
Sbjct: 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 185
Query: 362 GTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMILM 541
G+K+ F L++ES GW+H + FS G+++ W +H ST+C+ + + +V +
Sbjct: 186 GSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLV---DADKKMAVATLAS 242
Query: 542 DNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQLKLGTSLDSKEELNTNATLSAKDR 715
+ LP L + + N+++ AGHDC P FT L G LD ++ ++ ++A++R
Sbjct: 243 ETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQ-SSQRGMTARER 301
Query: 716 FRQIDRIATADSNDSI---INSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKT 886
F+ +D+ A+++ + ++S HKN++++I ++ G T G DG + +WD+K+
Sbjct: 302 FQNLDKKASSEGGAATGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVKS 361
Query: 887 L 889
L
Sbjct: 362 L 362
>sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
Length = 377
Score = 222 bits (566), Expect = 1e-57
Identities = 121/311 (38%), Positives = 185/311 (59%), Gaps = 18/311 (5%)
Frame = +2
Query: 2 KIVSCSTDRNAYVWA-RSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICS 178
+IV+CS DRNAYV+ R D +WK LV+L+LNRAATFVRWSP E+KFAVGS A++IS+C
Sbjct: 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCY 128
Query: 179 FDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESN 358
F+ ND+WVSKHLK+ + STI LDWHP+N +LA G D V A ++ D + S
Sbjct: 129 FEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASV 188
Query: 359 WGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPP-SVKMI 535
WG++L FN++ E G GW+H++ FS GN L ++ H S++ +A S +QPP ++ +
Sbjct: 189 WGSRLPFNTVCAEYPSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247
Query: 536 LMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDKD------QLKLGTSLDS--------- 670
+ LP +L+WA + ++ AG++ P + ++ L GTS S
Sbjct: 248 KLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGE 307
Query: 671 -KEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTI 847
+EE + + + FR +D ++ S S + + H+N I +R G+ G+ ++
Sbjct: 308 GREEEGPVSFTALRSTFRNMDLKGSSQSISS-LPTVHQNMIATLRPYAGTPGNITAFTSS 366
Query: 848 GRDGQLILWDL 880
G DG+++LW L
Sbjct: 367 GTDGRVVLWTL 377
>sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
Length = 384
Score = 187 bits (474), Expect = 4e-47
Identities = 110/318 (34%), Positives = 172/318 (54%), Gaps = 25/318 (7%)
Frame = +2
Query: 2 KIVSCSTDRNAYVWAR-SDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICS 178
+IV+CS DRNAYVW SD ++KP LV+L++NRAAT V W+P KFAVGSSA++I++C
Sbjct: 76 RIVTCSQDRNAYVWEPLSDGTYKPTLVLLRINRAATSVTWAPNGYKFAVGSSARIIAVCY 135
Query: 179 FDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKE-- 352
++ N++WVSKH+KK I STI CL WH + +LA G TD +RV+ +K D SKE
Sbjct: 136 YEHENNWWVSKHIKKPIKSTINCLSWHANGVLLAAGGTDGFMRVFSGFIKGLD--SKESV 193
Query: 353 --SNWGTKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSV 526
S WG K F L+ E G +IH + + + ++ + H T+ V Q P
Sbjct: 194 AGSPWGQKFPFGCLIREWYQG-SYIHDVEWRSQMERIAYVAHDGTLNVV----DYQSPVQ 248
Query: 527 KMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDKDQLKLGTSLDSKEELNTNAT--- 697
+ + LP+ +LVW + ++ G+ C P S + K +LD + ++A
Sbjct: 249 SVNAPEGLPYRSLVWINDHEIVCGGYSCHPVLFSEASEGWKFAKNLDKSDNNKSSALTAS 308
Query: 698 -----------------LSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGS 826
+SA +F+++D ++ + S H+NAI E+R SNG
Sbjct: 309 GNTDELSGNNDESSTFGISALRKFKELDLKGKVSTD--VQESAHENAIVELRPFAESNGQ 366
Query: 827 AQVLSTIGRDGQLILWDL 880
+S+ G DG+++++ +
Sbjct: 367 ITQVSSCGLDGKIVIYTI 384
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 43.1 bits (100), Expect = 0.001
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Frame = +2
Query: 5 IVSCSTDRNAYVWARSDKSWKPLLVILQLNRA-ATFVRWSPLENKFAVGSSAKLISICSF 181
+ S S D+ +W D S L ILQ + + V ++P + A GSS + + +
Sbjct: 1173 LASGSGDQTVRLW---DISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEI 1229
Query: 182 DTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVY-CALLKSHDVASKESN 358
+++ + +NS + ++PD ++LA GS+D VR++ + K +N
Sbjct: 1230 NSSKCLCTFQGHTSWVNSVV----FNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTN 1285
Query: 359 WGTKLTFNS--------------LLWES---------EGGLGWIHSIAFSNDGNKLIWST 469
W + FN LWE +G W+ S+ FS DG L +
Sbjct: 1286 WVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGS 1345
Query: 470 HSSTICVATVSGSQ 511
T+ + ++S +
Sbjct: 1346 DDQTVRLWSISSGE 1359
Score = 41.6 bits (96), Expect = 0.003
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 24/158 (15%)
Frame = +2
Query: 110 VRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGS 289
V +SP FA G S ++ T + K NS + + + D +LA GS
Sbjct: 870 VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCK----GHNSWVNSVGFSQDGKMLASGS 925
Query: 290 TDFHVRVY-------CALLKSHD--------------VASKESNWGTKL---TFNSLLWE 397
D VR++ K H +AS S+ +L + L+
Sbjct: 926 DDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYI 985
Query: 398 SEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 511
+G GW++S+AF+ DG+ L + T+ + +S SQ
Sbjct: 986 FQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQ 1023
Score = 36.2 bits (82), Expect = 0.13
Identities = 38/169 (22%), Positives = 70/169 (41%)
Frame = +2
Query: 5 IVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSFD 184
+ S S D+ +W S S L + V +SP A G +++ +
Sbjct: 1047 LASGSDDQTVRLWDIS--SGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDIS 1104
Query: 185 TNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWG 364
+ N + + S + L + P+ LA GS+D VR++ D++SK+
Sbjct: 1105 SGNCLYTLQ----GYTSWVRFLVFSPNGVTLANGSSDQIVRLW-------DISSKKC--- 1150
Query: 365 TKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 511
L+ +G W++++AFS DG L + T+ + +S S+
Sbjct: 1151 --------LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSK 1191
Score = 34.3 bits (77), Expect = 0.48
Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 24/193 (12%)
Frame = +2
Query: 5 IVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSFD 184
+ S S+D+ +W S S K L V ++P + A GS + + +
Sbjct: 1257 LASGSSDKTVRLWDIS--SSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEIS 1314
Query: 185 TNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYC---------------- 316
++ H + S ++ + + PD +LA GS D VR++
Sbjct: 1315 SSKCL----HTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNW 1370
Query: 317 --ALLKSHDVASKESNWGTK------LTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTH 472
+++ S D A S G + ++ L+ +G W+ SI FS DG L +
Sbjct: 1371 VGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSD 1430
Query: 473 SSTICVATVSGSQ 511
T+ + +S +
Sbjct: 1431 DQTVRLWNISSGE 1443
Score = 31.6 bits (70), Expect = 3.1
Identities = 36/160 (22%), Positives = 63/160 (39%)
Frame = +2
Query: 5 IVSCSTDRNAYVWARSDKSWKPLLVILQLNRAATFVRWSPLENKFAVGSSAKLISICSFD 184
+ S S D+ +W+ S S + L L V +SP A GS + + + S
Sbjct: 1341 LASGSDDQTVRLWSIS--SGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSIS 1398
Query: 185 TNNDFWVSKHLKKNINSTITCLDWHPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWG 364
+ + + N+ + + + PD +LA GS D VR++
Sbjct: 1399 SGKCLYTLQ----GHNNWVGSIVFSPDGTLLASGSDDQTVRLW----------------- 1437
Query: 365 TKLTFNSLLWESEGGLGWIHSIAFSNDGNKLIWSTHSSTI 484
++ L+ G + + S+AFS+DG L + TI
Sbjct: 1438 -NISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETI 1476
>sp|Q8CGF6|WDR47_MOUSE WD-repeat protein 47
Length = 920
Score = 42.7 bits (99), Expect = 0.001
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Frame = +2
Query: 53 DKSWKPLLVI--LQLNRAATFVRWSPLENKFAVGSSAKLISICSFDTNNDFWVSKHLK-- 220
DKS K + I L+ +A V + P + +AVGS++K + +C++ D + K
Sbjct: 592 DKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPEKMDASAHDNPKQP 651
Query: 221 -------KNINSTITCLDWHPDNNVLACGSTDFHVRV 310
K+ +I C+ W P +LA GS D +V+V
Sbjct: 652 VVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKV 688
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,446,272
Number of Sequences: 369166
Number of extensions: 2300819
Number of successful extensions: 6138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6082
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)