Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_P24
(378 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex sub... 100 1e-21
sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex sub... 100 2e-21
sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex sub... 99 2e-21
sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subun... 99 4e-21
sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subun... 98 7e-21
sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex sub... 98 7e-21
sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subuni... 86 3e-17
sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subuni... 57 1e-08
sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 38 0.006
sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein H... 36 0.031
>sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 100 bits (249), Expect = 1e-21
Identities = 43/120 (35%), Positives = 70/120 (58%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAF 182
HP+N +LA GS DF R++ A +K + + WG+K+ F L++ES GW+H + F
Sbjct: 151 HPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 210
Query: 183 SNDGNKLIWSTHSSTICVATVSGSQQPPSVKMSLMDNLPFLTLVWAAPNTVIGAGHDCVP 362
S G+++ W +H ST+C+A + + +V + LP L L + N+++ AGHDC P
Sbjct: 211 SASGSRVAWVSHDSTVCLA---DADKKMAVATLASETLPLLALTFITDNSLVAAGHDCFP 267
>sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
(Sid 329)
Length = 370
Score = 99.8 bits (247), Expect = 2e-21
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSI 176
HP+N +LA GS DF RV+ A +K D + WG+K+ F L+ E G GW+H +
Sbjct: 151 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 210
Query: 177 AFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMSLMDNLPFLTLVWAAPNTVIGAGHDC 356
+FS GN+L W +H ST+ VA S S Q +++ LP L++ + + N+V+ AGHDC
Sbjct: 211 SFSASGNRLAWVSHDSTVSVADASKSVQVSTLRTEF---LPLLSVSFVSENSVVAAGHDC 267
Query: 357 VP 362
P
Sbjct: 268 CP 269
>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
Length = 370
Score = 99.4 bits (246), Expect = 2e-21
Identities = 49/122 (40%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSI 176
HP+N +LA GS DF RV+ A +K D + WG+K+ F L+ E G GW+H +
Sbjct: 151 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKKASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 210
Query: 177 AFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMSLMDNLPFLTLVWAAPNTVIGAGHDC 356
+FS G++L W +H ST+ VA S S Q ++K LP L++ + + N+V+ AGHDC
Sbjct: 211 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEF---LPLLSVSFVSENSVVAAGHDC 267
Query: 357 VP 362
P
Sbjct: 268 CP 269
>sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 98.6 bits (244), Expect = 4e-21
Identities = 41/120 (34%), Positives = 70/120 (58%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAF 182
HP+N +LA GS DF R++ A +K + + WG+K+ F L++ES GW+H + F
Sbjct: 151 HPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 210
Query: 183 SNDGNKLIWSTHSSTICVATVSGSQQPPSVKMSLMDNLPFLTLVWAAPNTVIGAGHDCVP 362
S G+++ W +H ST+C+ +++ +V + LP L + + N+++ AGHDC P
Sbjct: 211 SAGGSRVAWVSHDSTVCLV---DAEKKMAVATLASETLPLLAITFITENSLVAAGHDCFP 267
>sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A
Length = 370
Score = 97.8 bits (242), Expect = 7e-21
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWE--SEGGLGWIHSI 176
HP+N +LA GS DF RV+ A +K D + WG+K+ F L+ E G GW+H +
Sbjct: 151 HPNNVLLAAGSCDFKCRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGV 210
Query: 177 AFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMSLMDNLPFLTLVWAAPNTVIGAGHDC 356
+FS G++L W +H ST+ VA S S Q +++ LP L++ + + N+V+ AGHDC
Sbjct: 211 SFSASGSRLAWVSHDSTVSVADASKSVQVSTLRTEF---LPLLSVSFVSENSVVAAGHDC 267
Query: 357 VP 362
P
Sbjct: 268 CP 269
>sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 97.8 bits (242), Expect = 7e-21
Identities = 41/120 (34%), Positives = 69/120 (57%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAF 182
HP+N +LA GS DF R++ A +K + + WG+K+ F L++ES GW+H + F
Sbjct: 151 HPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 210
Query: 183 SNDGNKLIWSTHSSTICVATVSGSQQPPSVKMSLMDNLPFLTLVWAAPNTVIGAGHDCVP 362
S G+++ W +H ST+C+ + + +V + LP L + + N+++ AGHDC P
Sbjct: 211 SASGSRVAWVSHDSTVCLV---DADKKMAVATLASETLPLLAVTFITENSLVAAGHDCFP 267
>sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
Length = 377
Score = 85.5 bits (210), Expect = 3e-17
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAF 182
HP+N +LA G D V A ++ D + S WG++L FN++ E G GW+H++ F
Sbjct: 155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSG-GWVHAVGF 213
Query: 183 SNDGNKLIWSTHSSTICVATVSGSQQPPSVKMSL-MDNLPFLTLVWAAPNTVIGAGHDCV 359
S GN L ++ H S++ +A S +QPP +++ + LP +L+WA + ++ AG++
Sbjct: 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS 273
Query: 360 PFTI 371
P +
Sbjct: 274 PILL 277
>sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
Length = 384
Score = 57.0 bits (136), Expect = 1e-08
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVYCALLKSHDVASKES----NWGTKLTFNSLLWESEGGLGWIH 170
H + +LA G TD +RV+ +K D SKES WG K F L+ E G +IH
Sbjct: 162 HANGVLLAAGGTDGFMRVFSGFIKGLD--SKESVAGSPWGQKFPFGCLIREWYQG-SYIH 218
Query: 171 SIAFSNDGNKLIWSTHSSTICVATVSGSQQPPSVKMSLMDNLPFLTLVWAAPNTVIGAGH 350
+ + + ++ + H T+ V Q P ++ + LP+ +LVW + ++ G+
Sbjct: 219 DVEWRSQMERIAYVAHDGTLNVV----DYQSPVQSVNAPEGLPYRSLVWINDHEIVCGGY 274
Query: 351 DCVPFTIS 374
C P S
Sbjct: 275 SCHPVLFS 282
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 38.1 bits (87), Expect = 0.006
Identities = 25/84 (29%), Positives = 44/84 (52%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFS 185
P++ +LA GS+D VR++ D++S E L+ +G GW++S+AF+
Sbjct: 958 PNSLMLASGSSDQTVRLW-------DISSGEC-----------LYIFQGHTGWVYSVAFN 999
Query: 186 NDGNKLIWSTHSSTICVATVSGSQ 257
DG+ L + T+ + +S SQ
Sbjct: 1000 LDGSMLATGSGDQTVRLWDISSSQ 1023
Score = 36.2 bits (82), Expect = 0.024
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 24/109 (22%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVY-CALLKSHDVASKESNWGTKLTFNS--------------LL 137
+PD ++LA GS+D VR++ + K +NW + FN L
Sbjct: 1251 NPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRL 1310
Query: 138 WES---------EGGLGWIHSIAFSNDGNKLIWSTHSSTICVATVSGSQ 257
WE +G W+ S+ FS DG L + T+ + ++S +
Sbjct: 1311 WEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGE 1359
Score = 33.5 bits (75), Expect = 0.16
Identities = 20/85 (23%), Positives = 39/85 (45%)
Frame = +3
Query: 3 HPDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAF 182
+PD + LA GS+D VR++ ++ + L +G W++S+ F
Sbjct: 1209 NPDGSTLASGSSDQTVRLW------------------EINSSKCLCTFQGHTSWVNSVVF 1250
Query: 183 SNDGNKLIWSTHSSTICVATVSGSQ 257
+ DG+ L + T+ + +S S+
Sbjct: 1251 NPDGSMLASGSSDKTVRLWDISSSK 1275
Score = 32.7 bits (73), Expect = 0.26
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFS 185
P+ LA GS+D VR++ D++SK+ L+ +G W++++AFS
Sbjct: 1126 PNGVTLANGSSDQIVRLW-------DISSKKC-----------LYTLQGHTNWVNAVAFS 1167
Query: 186 NDGNKLIWSTHSSTICVATVSGSQ 257
DG L + T+ + +S S+
Sbjct: 1168 PDGATLASGSGDQTVRLWDISSSK 1191
Score = 31.2 bits (69), Expect = 0.77
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFS 185
PD LA GS D VR++ D++S + L+ +G W++S+ F+
Sbjct: 1168 PDGATLASGSGDQTVRLW-------DISSSKC-----------LYILQGHTSWVNSVVFN 1209
Query: 186 NDGNKL----------IWSTHSSTICVATVSG 251
DG+ L +W +SS C+ T G
Sbjct: 1210 PDGSTLASGSSDQTVRLWEINSSK-CLCTFQG 1240
Score = 31.2 bits (69), Expect = 0.77
Identities = 21/84 (25%), Positives = 34/84 (40%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFS 185
PD +LA GS D VR++ ++ L+ +G W+ SI FS
Sbjct: 1378 PDGAILASGSGDQTVRLW------------------SISSGKCLYTLQGHNNWVGSIVFS 1419
Query: 186 NDGNKLIWSTHSSTICVATVSGSQ 257
DG L + T+ + +S +
Sbjct: 1420 PDGTLLASGSDDQTVRLWNISSGE 1443
Score = 27.7 bits (60), Expect = 8.5
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFS 185
PD +LA GS D VR++ ++ L+ G + + S+AFS
Sbjct: 1420 PDGTLLASGSDDQTVRLW------------------NISSGECLYTLHGHINSVRSVAFS 1461
Query: 186 NDGNKLIWSTHSSTI 230
+DG L + TI
Sbjct: 1462 SDGLILASGSDDETI 1476
>sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein HET-E-1
Length = 1356
Score = 35.8 bits (81), Expect = 0.031
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 38/120 (31%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCAL-------LKSHDVASKESNW-------GTKLTFNSL--- 134
PD +A GS D ++++ A+ L+ H +S W G ++ S+
Sbjct: 1061 PDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHG----DSVWSVAFSPDGQRVASGSIDGT 1116
Query: 135 --LWES---------EGGLGWIHSIAFSNDGNKL----------IWSTHSSTICVATVSG 251
+W++ EG GW+HS+AFS DG ++ IW S T C T+ G
Sbjct: 1117 IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGT-CTQTLEG 1175
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFS 185
PD +A GS D ++++ D AS + EG GW+ S+AFS
Sbjct: 1145 PDGQRVASGSIDGTIKIW-------DAAS-----------GTCTQTLEGHGGWVQSVAFS 1186
Query: 186 NDGNKL----------IWSTHSSTICVATVSG 251
DG ++ IW T S T C T+ G
Sbjct: 1187 PDGQRVASGSSDKTIKIWDTASGT-CTQTLEG 1217
Score = 32.3 bits (72), Expect = 0.35
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFS 185
PD +A GS+D ++++ D AS + EG GW+ S+AFS
Sbjct: 1187 PDGQRVASGSSDKTIKIW-------DTAS-----------GTCTQTLEGHGGWVQSVAFS 1228
Query: 186 NDGNKL----------IWSTHSSTICVATVS 248
DG ++ IW T S T C T++
Sbjct: 1229 PDGQRVASGSSDNTIKIWDTASGT-CTQTLN 1258
Score = 29.6 bits (65), Expect = 2.2
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFS 185
PD +A GS D ++++ D AS + EG GW+ S+ FS
Sbjct: 1019 PDGQRVASGSDDKTIKIW-------DTAS-----------GTCTQTLEGHGGWVQSVVFS 1060
Query: 186 NDGNKL----------IWSTHSSTICVATVSG 251
DG ++ IW S T C T+ G
Sbjct: 1061 PDGQRVASGSDDHTIKIWDAVSGT-CTQTLEG 1091
Score = 28.9 bits (63), Expect = 3.8
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Frame = +3
Query: 6 PDNNVLACGSTDFHVRVYCALLKSHDVASKESNWGTKLTFNSLLWESEGGLGWIHSIAFS 185
PD +A GS D +++ W T + E GG W S+AFS
Sbjct: 977 PDGQRVASGSGDKTIKI----------------WDTASGTCTQTLEGHGGSVW--SVAFS 1018
Query: 186 NDGNKL----------IWSTHSSTICVATVSG 251
DG ++ IW T S T C T+ G
Sbjct: 1019 PDGQRVASGSDDKTIKIWDTASGT-CTQTLEG 1049
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,673,833
Number of Sequences: 369166
Number of extensions: 1016904
Number of successful extensions: 2541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2526
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)