Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E03
(539 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subun... 85 1e-16
sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex sub... 84 2e-16
sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex sub... 81 2e-15
sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex sub... 79 5e-15
sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex sub... 79 7e-15
sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subun... 79 7e-15
sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subuni... 53 5e-07
sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subuni... 52 9e-07
sp|Q9HPE9|RS8E_HALSA 30S ribosomal protein S8e 33 0.58
sp|O60907|TBL1X_HUMAN F-box-like/WD-repeat protein TBL1X (T... 32 0.75
>sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 85.1 bits (209), Expect = 1e-16
Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Frame = +2
Query: 20 SQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQLKLGTSLDSKEE 193
+++ +V + + LP L + + N+++ AGHDC P FT L G LD ++
Sbjct: 231 AEKKMAVATLASETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGTLSFGGRLDVPKQ 290
Query: 194 LNTNATLSAKDRFRQIDRIATADSNDSI---INSKHKNAINEIRIMKGSNGSAQVLSTIG 364
N+ L+A++RF+ +D+ A+++ + ++S HKN++++I ++ G T G
Sbjct: 291 -NSQRGLTARERFQNLDKKASSEGGAATGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG 349
Query: 365 RDGQLILWDLKTLSQKMSDLKIQ 433
DG + +WD+K+L + DLKI+
Sbjct: 350 MDGGMSIWDVKSLESALKDLKIR 372
>sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 84.3 bits (207), Expect = 2e-16
Identities = 42/138 (30%), Positives = 77/138 (55%), Gaps = 5/138 (3%)
Frame = +2
Query: 35 SVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQLKLGTSLDSKEELNTNA 208
+V + + LP L L + N+++ AGHDC P FT L G LD ++ ++
Sbjct: 236 AVATLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQ-SSQR 294
Query: 209 TLSAKDRFRQIDRIATADSNDSI---INSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQL 379
L+A++RF+ +D+ A+++ + ++S HKN++++I ++ G T G DG +
Sbjct: 295 GLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354
Query: 380 ILWDLKTLSQKMSDLKIQ 433
+WD+K+L + DLKI+
Sbjct: 355 SIWDVKSLESALKDLKIK 372
>sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B (ARP2/3 complex 41 kDa
subunit) (p41-ARC)
Length = 372
Score = 80.9 bits (198), Expect = 2e-15
Identities = 40/138 (28%), Positives = 77/138 (55%), Gaps = 5/138 (3%)
Frame = +2
Query: 35 SVKMILMDNLPFLTLVWAAPNTVIGAGHDCVP--FTISTDKDQLKLGTSLDSKEELNTNA 208
+V + + LP L + + N+++ AGHDC P FT L G LD ++ ++
Sbjct: 236 AVATLASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQ-SSQR 294
Query: 209 TLSAKDRFRQIDRIATADSNDSI---INSKHKNAINEIRIMKGSNGSAQVLSTIGRDGQL 379
++A++RF+ +D+ A+++ + ++S HKN++++I ++ G T G DG +
Sbjct: 295 GMTARERFQNLDKKASSEGGAATGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 354
Query: 380 ILWDLKTLSQKMSDLKIQ 433
+WD+K+L + DLKI+
Sbjct: 355 SIWDVKSLESALKDLKIK 372
>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
Length = 370
Score = 79.3 bits (194), Expect = 5e-15
Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Frame = +2
Query: 8 TVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFT-ISTDKDQLKLGTSLD- 181
+V+ + + V + + LP L++ + + N+V+ AGHDC P I D+ L + LD
Sbjct: 229 SVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFIYDDRGCLTFVSKLDI 288
Query: 182 SKEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTI 361
K+ + N +SA +RFR +D+ AT + ++ + + H+N+I ++ I + + T
Sbjct: 289 PKQSIQRN--MSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTT 346
Query: 362 GRDGQLILWDLKTLSQKMSDLKI 430
G DG + +WD KTL + L+I
Sbjct: 347 GIDGAMTIWDFKTLESSIQGLRI 369
>sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A (SOP2-like protein)
(Sid 329)
Length = 370
Score = 79.0 bits (193), Expect = 7e-15
Identities = 42/143 (29%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Frame = +2
Query: 8 TVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TDKDQLKLGTSLD- 181
+V+ + + V + + LP L++ + + N+V+ AGHDC P + D+ L + LD
Sbjct: 229 SVADASKSVQVSTLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDV 288
Query: 182 SKEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTI 361
K+ + N +SA +RFR +D+ AT + ++ + + H+N+I ++ I + + T
Sbjct: 289 PKQSIQRN--MSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTT 346
Query: 362 GRDGQLILWDLKTLSQKMSDLKI 430
G DG + +WD KTL + L+I
Sbjct: 347 GIDGAMTIWDFKTLESSIQGLRI 369
>sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A
Length = 370
Score = 79.0 bits (193), Expect = 7e-15
Identities = 42/143 (29%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Frame = +2
Query: 8 TVSGSQQPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTIS-TDKDQLKLGTSLD- 181
+V+ + + V + + LP L++ + + N+V+ AGHDC P + D+ L + LD
Sbjct: 229 SVADASKSVQVSTLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDV 288
Query: 182 SKEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTI 361
K+ + N +SA +RFR +D+ AT + ++ + + H+N+I ++ I + + T
Sbjct: 289 PKQSIQRN--MSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTT 346
Query: 362 GRDGQLILWDLKTLSQKMSDLKI 430
G DG + +WD KTL + L+I
Sbjct: 347 GIDGAMTIWDFKTLESSIQGLRI 369
>sp|P78774|ARPC1_SCHPO Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
Length = 377
Score = 52.8 bits (125), Expect = 5e-07
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 17/148 (11%)
Frame = +2
Query: 2 VATVSGSQQPPSVKM-ILMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDKD------QL 160
+A S +QPP + + + LP +L+WA + ++ AG++ P + ++ L
Sbjct: 231 IAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDL 290
Query: 161 KLGTSLDS----------KEELNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINE 310
GTS S +EE + + + FR +D ++ S S+ + H+N I
Sbjct: 291 DAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSL-PTVHQNMIAT 349
Query: 311 IRIMKGSNGSAQVLSTIGRDGQLILWDL 394
+R G+ G+ ++ G DG+++LW L
Sbjct: 350 LRPYAGTPGNITAFTSSGTDGRVVLWTL 377
>sp|P38328|ARPC1_YEAST Probable ARP2/3 complex 41 kDa subunit (p41-ARC)
Length = 384
Score = 52.0 bits (123), Expect = 9e-07
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 20/143 (13%)
Frame = +2
Query: 26 QPPSVKMILMDNLPFLTLVWAAPNTVIGAGHDCVPFTISTDKDQLKLGTSLDSKEELNTN 205
Q P + + LP+ +LVW + ++ G+ C P S + K +LD + ++
Sbjct: 244 QSPVQSVNAPEGLPYRSLVWINDHEIVCGGYSCHPVLFSEASEGWKFAKNLDKSDNNKSS 303
Query: 206 AT--------------------LSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIMK 325
A +SA +F+++D ++ + S H+NAI E+R
Sbjct: 304 ALTASGNTDELSGNNDESSTFGISALRKFKELDLKGKVSTD--VQESAHENAIVELRPFA 361
Query: 326 GSNGSAQVLSTIGRDGQLILWDL 394
SNG +S+ G DG+++++ +
Sbjct: 362 ESNGQITQVSSCGLDGKIVIYTI 384
>sp|Q9HPE9|RS8E_HALSA 30S ribosomal protein S8e
Length = 124
Score = 32.7 bits (73), Expect = 0.58
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 194 LNTNATLSAKDRFRQIDRIATADSNDSIINSKHKNAINEIRIMKGSNGSAQVLSTIGRDG 373
L+TN A D + I +ND+ N +N I + I++ G+A+V S G+DG
Sbjct: 56 LSTNVVNVATDSGAERATIEDVSANDANPNYARRNIITKGAIIETDAGTARVTSRPGQDG 115
Query: 374 QL 379
Q+
Sbjct: 116 QV 117
>sp|O60907|TBL1X_HUMAN F-box-like/WD-repeat protein TBL1X (Transducin beta-like 1X
protein) (Transducin-beta-like 1, X-linked) (SMAP55)
Length = 526
Score = 32.3 bits (72), Expect = 0.75
Identities = 30/96 (31%), Positives = 41/96 (42%)
Frame = +2
Query: 113 GHDCVPFTISTDKDQLKLGTSLDSKEELNTNATLSAKDRFRQIDRIATADSNDSIINSKH 292
GHD + ++KD TSLD NTN TL A + RI T D N + +H
Sbjct: 231 GHD-----VPSNKDV----TSLD----WNTNGTLLATGSYDGFARIWTEDGNLASTLGQH 277
Query: 293 KNAINEIRIMKGSNGSAQVLSTIGRDGQLILWDLKT 400
K I ++ N + + G D I+WD T
Sbjct: 278 KGPIFALK----WNRKGNYILSAGVDKTTIIWDAHT 309
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,961,238
Number of Sequences: 369166
Number of extensions: 1090802
Number of successful extensions: 2461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2450
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)