Planaria EST Database

DrC_00766

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00766
         (366 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O88281|EGFL3_RAT  Multiple EGF-like-domain protein 3 prec...    33   0.21 
sp|Q62563|SRY_MUSSP  Sex-determining region Y protein (Testi...    31   0.78 
sp|Q05738|SRY_MOUSE  Sex-determining region Y protein (Testi...    31   1.0  
sp|O35806|LTBP2_RAT  Latent transforming growth factor-beta-...    30   1.3  
sp|O08999|LTBP2_MOUSE  Latent transforming growth factor-bet...    30   1.3  
sp|P04929|HRPX_PLALO  Histidine-rich glycoprotein precursor        30   1.3  
sp|P0C061|GRSA_ANEMI  Gramicidin S synthetase 1 (Gramicidin ...    30   1.7  
sp|P0C062|GRSA_BREBE  Gramicidin S synthetase 1 (Gramicidin ...    30   1.7  
sp|Q9XUC4|YGJK_CAEEL  Hypothetical protein T28F3.3 in chromo...    30   2.3  
sp|Q8CRC8|RPIA_STAES  Ribose-5-phosphate isomerase A (Phosph...    29   3.0  

>sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
           growth factor-like domains 6)
          Length = 1574

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 117 PGVTAGHCDDGCHDTKAKPHCDDGCH 194
           PGV+  HC+DGC       HC   CH
Sbjct: 591 PGVSGAHCEDGCPKGFYGKHCRKKCH 616

>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
          Length = 355

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -1

Query: 201 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVF--QHDDVPFYHDH 49
           Q+   H H +    + D+HH+  QQ    + +H      F   H     +HDH
Sbjct: 196 QKQQFHDHQQQQQQFHDHHHQQQQQQFHDHHHHQQQQQQFHDHHQQKQQFHDH 248


 Score = 29.6 bits (65), Expect = 2.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -1

Query: 201 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQH---DDVPFYHDH 49
           Q HD HHH +    + D+HH   QQ  + +D+H        H        +HDH
Sbjct: 209 QFHD-HHHQQQQQQFHDHHHHQ-QQQQQFHDHHQQKQQFHDHHQQQQQQQFHDH 260

>sp|Q05738|SRY_MOUSE Sex-determining region Y protein (Testis-determining factor)
          Length = 395

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 16/66 (24%), Positives = 25/66 (37%)
 Frame = -1

Query: 246 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDV 67
           +Q  D H        Q+   H H++    + D HH+  QQ    + +H        H   
Sbjct: 163 QQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHD-HHQQQQQFHDHHHHHQEQQFHDHHQQQ 221

Query: 66  PFYHDH 49
             +HDH
Sbjct: 222 QQFHDH 227


 Score = 29.6 bits (65), Expect = 2.3
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = -1

Query: 246 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVF----Q 79
           +Q +D H       HQE   H H++    + D+  +  QQ  + + +H      F     
Sbjct: 200 QQFHDHH-----HHHQEQQFHDHHQQQQQFHDHQQQQQQQQQQQFHDHHQQKQQFHDHHH 254

Query: 78  HDDVPFYHDH 49
           H     +HDH
Sbjct: 255 HQQQQQFHDH 264


 Score = 27.7 bits (60), Expect = 8.6
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -1

Query: 240 INDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPF 61
           I   HL       Q+   H+H++    + D+H +  QQ  +    H +      H     
Sbjct: 138 IPTGHLQQQQQQQQQQQFHNHHQQQQQFYDHHQQQQQQQQQQQQFHDH------HQQKQQ 191

Query: 60  YHDH 49
           +HDH
Sbjct: 192 FHDH 195

>sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-binding protein 2 precursor
            (LTBP-2)
          Length = 1764

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 102  DDCHKPGVTAGHCDDGCHDTKAKPHCDDGCHAPGVKSDHCKD 227
            D+C +PGV +G     C +T+   HC+       V+  HC+D
Sbjct: 922  DECEQPGVCSG---GRCSNTEGSYHCECDQGYVMVRRGHCQD 960

>sp|O08999|LTBP2_MOUSE Latent transforming growth factor-beta-binding protein 2 precursor
            (LTBP-2)
          Length = 1813

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 102  DDCHKPGVTAGHCDDGCHDTKAKPHCDDGCHAPGVKSDHCKD 227
            D+C +PGV +G     C +T+   HC+       V+  HC+D
Sbjct: 923  DECEQPGVCSG---GRCSNTEGSYHCECDRGYIMVRKGHCQD 961

>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
          Length = 351

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -1

Query: 204 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 49
           H  HD HHH+     + D HH +       + +H ++A    H     +H H
Sbjct: 289 HHHHDAHHHHHH---HHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHH 337


 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 204 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 49
           H+EH  HHH      + ++HH +       + +H  + L + H   P +H H
Sbjct: 130 HEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHH--HHLGYHHHHAPHHHHH 179


 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -1

Query: 204 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 49
           H  HD HHH+     + D HH +       + +H ++A    H     +H H
Sbjct: 279 HHHHDAHHHHHH---HHDAHHHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHH 327


 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -1

Query: 204 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 49
           H  HD HHH+     + D HH +       +D H ++     H D   +H H
Sbjct: 299 HHHHDAHHHHH----HHDAHHHHHHH----HDAHHHH---HHHHDAHHHHHH 339


 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -1

Query: 204 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 49
           H  H  HHH+   L +  +HH  A        +H ++A    H +   +H H
Sbjct: 104 HHHHPPHHHHH--LGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHHHHH 153


 Score = 28.5 bits (62), Expect = 5.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -1

Query: 204 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 49
           H  HD HHH+     + D HH +       +D H ++     H D   +H H
Sbjct: 249 HHHHDAHHHHHH---HHDAHHHHHHH----HDAHHHH---HHHHDAHHHHHH 290


 Score = 28.5 bits (62), Expect = 5.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -1

Query: 204 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 49
           H  HD HHH+     + D HH +       +D H ++     H D   +H H
Sbjct: 269 HHHHDAHHHHHH---HHDAHHHHHHH----HDAHHHH---HHHHDAHHHHHH 310

>sp|P0C061|GRSA_ANEMI Gramicidin S synthetase 1 (Gramicidin S synthetase I) [Includes:
           ATP-dependent D-phenylalanine adenylase (D-PheA)
           (D-phenylalanine activase); Phenylalanine racemase
           [ATP-hydrolyzing] ]
          Length = 1098

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 192 DIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDHGN 43
           ++HH N++ +LYR N   + + LLRV     +N +V  HD +   + H N
Sbjct: 640 NMHHWNQSYMLYRPNGF-DKEILLRV-----FNKIVEHHDALRMIYKHHN 683

>sp|P0C062|GRSA_BREBE Gramicidin S synthetase 1 (Gramicidin S synthetase I) [Includes:
           ATP-dependent D-phenylalanine adenylase (D-PheA)
           (D-phenylalanine activase); Phenylalanine racemase
           [ATP-hydrolyzing] ]
          Length = 1098

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 192 DIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDHGN 43
           ++HH N++ +LYR N   + + LLRV     +N +V  HD +   + H N
Sbjct: 640 NMHHWNQSYMLYRPNGF-DKEILLRV-----FNKIVEHHDALRMIYKHHN 683

>sp|Q9XUC4|YGJK_CAEEL Hypothetical protein T28F3.3 in chromosome IV
          Length = 393

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 216 DLTSHQEHDIHHHNEALLLYRDNHHRNAQ 130
           +L  H EHD  HH+E L+      HR  Q
Sbjct: 46  ELHDHHEHDHDHHDEQLIRKNHTSHREIQ 74

>sp|Q8CRC8|RPIA_STAES Ribose-5-phosphate isomerase A (Phosphoriboisomerase A) (PRI)
 sp|Q5HLQ9|RPIA_STAEQ Ribose-5-phosphate isomerase A (Phosphoriboisomerase A) (PRI)
          Length = 230

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = -1

Query: 150 NHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDHGNVLL 34
           N ++ A+++ R YD H+   +   ++DVPF  D+GN +L
Sbjct: 144 NWYQVAKKIERTYDIHVSRRV---NEDVPFITDNGNYIL 179

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,336,137
Number of Sequences: 369166
Number of extensions: 662737
Number of successful extensions: 2011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00766

  1. Dr_sW_019_O07
  2. Dr_sW_010_M11
  3. Dr_sW_012_L21
  4. Dr_sW_024_O12
  5. Dr_sW_006_M15
  6. Dr_sW_023_A01
  7. Dr_sW_013_G14
  8. Dr_sW_012_O23
  9. Dr_sW_008_L24
  10. Dr_sW_007_O04
  11. Dr_sW_008_M17
  12. Dr_sW_019_A15
  13. Dr_sW_023_J11
  14. Dr_sW_009_M20
  15. Dr_sW_001_O22
  16. Dr_sW_021_A19
  17. Dr_sW_019_E19
  18. Dr_sW_006_L23
  19. Dr_sW_028_A09
  20. Dr_sW_011_N10
  21. Dr_sW_019_P13
  22. Dr_sW_023_C01