Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_L24
(338 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05738|SRY_MOUSE Sex-determining region Y protein (Testi... 35 0.070
sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testi... 34 0.092
sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 prec... 33 0.21
sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-... 30 1.3
sp|Q62565|SRY_MUSSI Sex-determining region Y protein (Testi... 30 1.3
sp|O08999|LTBP2_MOUSE Latent transforming growth factor-bet... 30 1.3
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 30 1.3
sp|Q9XUC4|YGJK_CAEEL Hypothetical protein T28F3.3 in chromo... 30 2.3
sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion)... 30 2.3
sp|Q8K1S3|UNC5B_MOUSE Netrin receptor UNC5B precursor (Unc-... 29 3.9
>sp|Q05738|SRY_MOUSE Sex-determining region Y protein (Testis-determining factor)
Length = 395
Score = 34.7 bits (78), Expect = 0.070
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = -1
Query: 221 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDV 42
+Q D H Q+ H H++ + D HH+ QQ + +H H
Sbjct: 163 QQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHD-HHQQQQQFHDHHHHHQEQQFHDHHQQQ 221
Query: 41 PFYHDHEQRSSE 6
+HDH+Q+ +
Sbjct: 222 QQFHDHQQQQQQ 233
Score = 33.5 bits (75), Expect = 0.16
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = -1
Query: 221 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVF----Q 54
+Q +D H HQE H H++ + D+ + QQ + + +H F
Sbjct: 200 QQFHDHH-----HHHQEQQFHDHHQQQQQFHDHQQQQQQQQQQQFHDHHQQKQQFHDHHH 254
Query: 53 HDDVPFYHDHEQRSSE 6
H +HDH+Q+ +
Sbjct: 255 HQQQQQFHDHQQQQQQ 270
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/70 (22%), Positives = 28/70 (40%)
Frame = -1
Query: 215 INDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPF 36
I HL Q+ H+H++ + D+H + QQ + H + H
Sbjct: 138 IPTGHLQQQQQQQQQQQFHNHHQQQQQFYDHHQQQQQQQQQQQQFHDH------HQQKQQ 191
Query: 35 YHDHEQRSSE 6
+HDH Q+ +
Sbjct: 192 FHDHHQQQQQ 201
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 176 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVF-QHDDVPFYHDHEQRSSE 6
Q+ H H + + D+HH+ QQ + +D+H H +HDH Q+ +
Sbjct: 287 QKQQFHDHPQQQQQFHDHHHQQ-QQKQQFHDHHQQKQQFHDHHQQKQQFHDHHQQQQQ 343
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 176 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVF-QHDDVPFYHDHEQRSSE 6
Q HD HH + + D+H QQ + +D+H H +HDH Q+ +
Sbjct: 300 QFHDHHHQQQQKQQFHDHH----QQKQQFHDHHQQKQQFHDHHQQQQQFHDHHQQQQQ 353
>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
Length = 355
Score = 34.3 bits (77), Expect = 0.092
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -1
Query: 176 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVF--QHDDVPFYHDHEQRSSE 6
Q+ H H + + D+HH+ QQ + +H F H +HDH Q+ +
Sbjct: 196 QKQQFHDHQQQQQQFHDHHHQQQQQQFHDHHHHQQQQQQFHDHHQQKQQFHDHHQQQQQ 254
Score = 32.3 bits (72), Expect = 0.35
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -1
Query: 176 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQH---DDVPFYHDHEQRSSE 6
Q HD HHH + + D+HH QQ + +D+H H +HDH Q+ +
Sbjct: 209 QFHD-HHHQQQQQQFHDHHHHQ-QQQQQFHDHHQQKQQFHDHHQQQQQQQFHDHPQQQQQ 266
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 176 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVF-QHDDVPFYHDHEQRSSE 6
Q+ H H + + D+HH + QQ + +D+H H +HDH+Q+ +
Sbjct: 263 QQQQFHDHPQQKQQFHDHHH-HQQQKQQFHDHHQQKQQFHDHHQQQQQFHDHQQQQQQ 319
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 176 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQH-DDVPFYHDHEQRSSE 6
Q+ H+H++ + D+H QQ + +D+H H +HDH+Q+ +
Sbjct: 146 QQQQFHNHHQQKQQFHDHH----QQKQQFHDHHQQQQQFHDHQQQQQQFHDHQQQKQQ 199
>sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
growth factor-like domains 6)
Length = 1574
Score = 33.1 bits (74), Expect = 0.21
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 92 PGVTAGHCDDGCHDTKAKPHCDDGCH 169
PGV+ HC+DGC HC CH
Sbjct: 591 PGVSGAHCEDGCPKGFYGKHCRKKCH 616
>sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1764
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 77 DDCHKPGVTAGHCDDGCHDTKAKPHCDDGCHAPGVKSDHCKD 202
D+C +PGV +G C +T+ HC+ V+ HC+D
Sbjct: 922 DECEQPGVCSG---GRCSNTEGSYHCECDQGYVMVRRGHCQD 960
>sp|Q62565|SRY_MUSSI Sex-determining region Y protein (Testis-determining factor)
Length = 311
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/72 (20%), Positives = 26/72 (36%)
Frame = -1
Query: 221 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDV 42
+Q +D H Q+ H H + + D+HH QQ + H
Sbjct: 171 QQFHDHH-------QQKQQFHDHQQQQQQFHDHHHHQQQQQFHDHQQQQQQLHNHHHQQQ 223
Query: 41 PFYHDHEQRSSE 6
+HD+ Q+ +
Sbjct: 224 QQFHDYPQQQQQ 235
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -1
Query: 176 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDHEQRSSE 6
Q+ H+H++ + D+H + QQ + +D+ H +HDH+Q+ +
Sbjct: 147 QQQQFHNHHQQKQQFHDHHQQQQQQ--QFHDH---------HQQKQQFHDHQQQQQQ 192
>sp|O08999|LTBP2_MOUSE Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1813
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 77 DDCHKPGVTAGHCDDGCHDTKAKPHCDDGCHAPGVKSDHCKD 202
D+C +PGV +G C +T+ HC+ V+ HC+D
Sbjct: 923 DECEQPGVCSG---GRCSNTEGSYHCECDRGYIMVRKGHCQD 961
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -1
Query: 179 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDHEQRS 12
H+EH HHH + ++HH + + +H + L + H P +H H +
Sbjct: 130 HEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHH--HHLGYHHHHAPHHHHHHHHA 183
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -1
Query: 179 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 24
H HD HHH+ + D HH + + +H ++A H +H H
Sbjct: 289 HHHHDAHHHHHH---HHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHH 337
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -1
Query: 179 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 24
H HD HHH+ + D HH + + +H ++A H +H H
Sbjct: 279 HHHHDAHHHHHH---HHDAHHHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHH 327
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1
Query: 179 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 24
H HD HHH+ + D HH + +D H ++ H D +H H
Sbjct: 299 HHHHDAHHHHH----HHDAHHHHHHH----HDAHHHH---HHHHDAHHHHHH 339
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -1
Query: 179 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 24
H H HHH+ L + +HH A +H ++A H + +H H
Sbjct: 104 HHHHPPHHHHH--LGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHHHHH 153
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1
Query: 179 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 24
H HD HHH+ + D HH + +D H ++ H D +H H
Sbjct: 249 HHHHDAHHHHHH---HHDAHHHHHHH----HDAHHHH---HHHHDAHHHHHH 290
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1
Query: 179 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 24
H HD HHH+ + D HH + +D H ++ H D +H H
Sbjct: 269 HHHHDAHHHHHH---HHDAHHHHHHH----HDAHHHH---HHHHDAHHHHHH 310
>sp|Q9XUC4|YGJK_CAEEL Hypothetical protein T28F3.3 in chromosome IV
Length = 393
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 191 DLTSHQEHDIHHHNEALLLYRDNHHRNAQ 105
+L H EHD HH+E L+ HR Q
Sbjct: 46 ELHDHHEHDHDHHDEQLIRKNHTSHREIQ 74
>sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C)
Length = 2201
Score = 29.6 bits (65), Expect = 2.3
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 21/68 (30%)
Frame = +2
Query: 71 CKDDCHKPGVTAGH---CDDG-----CHDTKAKPHC-------------DDGCHAPGVKS 187
C +DCH+ G CDDG C D + C +DG P
Sbjct: 470 CPNDCHQHGRCVNGMCVCDDGYTGEDCRDRQCPRDCSNRGLCVDGQCVCEDGFTGPDCAE 529
Query: 188 DHCKDDCH 211
C +DCH
Sbjct: 530 LSCPNDCH 537
>sp|Q8K1S3|UNC5B_MOUSE Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5 homolog 2)
Length = 945
Score = 28.9 bits (63), Expect = 3.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 140 LLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYH 30
LL++D++H L + H + L+ ++ ++PFYH
Sbjct: 745 LLFKDSYHNLRLSLHDIPHAHWRSKLLAKYQEIPFYH 781
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,973,213
Number of Sequences: 369166
Number of extensions: 599857
Number of successful extensions: 1934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of database: 68,354,980
effective HSP length: 80
effective length of database: 53,576,180
effective search space used: 1714437760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)