Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_A01
(280 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 prec... 32 0.35
sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-... 30 1.3
sp|O08999|LTBP2_MOUSE Latent transforming growth factor-bet... 30 1.3
sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protei... 30 1.7
sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein ... 30 1.7
sp|Q61072|ADAM9_MOUSE ADAM 9 precursor (A disintegrin and m... 29 3.9
sp|Q80V70|EGFL3_MOUSE Multiple EGF-like-domain protein 3 29 3.9
sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testi... 29 3.9
sp|P21917|DRD4_HUMAN D(4) dopamine receptor (D(2C) dopamine... 28 5.0
sp|P53284|YG3G_YEAST Hypothetical 13.2 kDa protein in PAS5-... 28 5.0
>sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
growth factor-like domains 6)
Length = 1574
Score = 32.3 bits (72), Expect = 0.35
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 34 PGVTAGHCNDGCHDTKAKPHCDDGCH 111
PGV+ HC DGC HC CH
Sbjct: 591 PGVSGAHCEDGCPKGFYGKHCRKKCH 616
>sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1764
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 19 DDCHKPGVTAGHCNDGCHDTKAKPHCDDGCHAPGVKSDHCKD 144
D+C +PGV +G C +T+ HC+ V+ HC+D
Sbjct: 922 DECEQPGVCSG---GRCSNTEGSYHCECDQGYVMVRRGHCQD 960
>sp|O08999|LTBP2_MOUSE Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1813
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 19 DDCHKPGVTAGHCNDGCHDTKAKPHCDDGCHAPGVKSDHCKD 144
D+C +PGV +G C +T+ HC+ V+ HC+D
Sbjct: 923 DECEQPGVCSG---GRCSNTEGSYHCECDRGYIMVRKGHCQD 961
>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 precursor (Notch 1) (Motch
A) (mT14) (p300) [Contains: Notch 1 extracellular
truncation; Notch 1 intracellular domain]
Length = 2531
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
Frame = +1
Query: 10 HCKDDCHKPG---------VTAGHCN----DGCHDTKAKPHCDDGCHA 114
HC C+ G +T G CN C D + HCD GC++
Sbjct: 1504 HCDSQCNSAGCLFDGFDCQLTEGQCNPLYDQYCKDHFSDGHCDQGCNS 1551
>sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 precursor (Notch 1)
[Contains: Notch 1 extracellular truncation; Notch 1
intracellular domain]
Length = 2531
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
Frame = +1
Query: 10 HCKDDCHKPG---------VTAGHCN----DGCHDTKAKPHCDDGCHA 114
HC C+ G +T G CN C D + HCD GC++
Sbjct: 1504 HCDSQCNSAGCLFDGFDCQLTEGQCNPLYDQYCKDHFSDGHCDQGCNS 1551
>sp|Q61072|ADAM9_MOUSE ADAM 9 precursor (A disintegrin and metalloproteinase domain 9)
(Metalloprotease/disintegrin/cysteine-rich protein 9)
(Myeloma cell metalloproteinase) (Meltrin gamma)
Length = 845
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 25 CHKPGVTAGHCNDGCHDTKAKPHCDDGCHAPGVKS 129
CH GV + N C D A PHCD + V S
Sbjct: 650 CHGHGVCNSNKNCHCEDGWAPPHCDTKGYGGSVDS 684
>sp|Q80V70|EGFL3_MOUSE Multiple EGF-like-domain protein 3
Length = 656
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Frame = +1
Query: 10 HCKDDCH-KPGVTAGHCNDGCHDTKAKPHCDDGCHAPG 120
H +CH PG T C C C+ C PG
Sbjct: 271 HVSGECHCPPGFTGPGCEQACQPGTFGKDCEHPCQCPG 308
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 34 PGVTAGHCNDGCHDTKAKPHCDDGC 108
PG T GHC GC + C+ C
Sbjct: 410 PGKTGGHCERGCPQDRFGKGCEHKC 434
>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
Length = 355
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 163 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHCNAQQLLRVYDNH 20
+Q +D H + Q HD HHH + + D+H QQ + +D+H
Sbjct: 208 QQFHDHH--HQQQQQQFHDHHHHQQQQQQFHDHH----QQKQQFHDHH 249
>sp|P21917|DRD4_HUMAN D(4) dopamine receptor (D(2C) dopamine receptor)
Length = 467
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Frame = +1
Query: 4 QEHCKDDCHKP--GVTAGHCNDGCHDTKAKPH-----CDDGCH--APGVKSDHCKDDC 150
Q+ C DC P G+ G C C A P C C APG+ D C DC
Sbjct: 255 QDPCGPDCAPPAPGLPRGPCGPDC--APAAPGLPPDPCGPDCAPPAPGLPQDPCGPDC 310
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +1
Query: 4 QEHCKDDCHKP--GVTAGHCNDGCHDTKAKPHCDDGCHAPGVKSDHCKDDC 150
Q+ C DC P G+ G C C A P APG+ D C DC
Sbjct: 303 QDPCGPDCAPPAPGLPRGPCGPDC----APP-------APGLPQDPCGPDC 342
>sp|P53284|YG3G_YEAST Hypothetical 13.2 kDa protein in PAS5-CBF2 intergenic region
Length = 112
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 169 IIFTVKNNNYLVYIIIYFGLFRSRNMGIN 255
I+F++ NN ++Y+ YF L S IN
Sbjct: 35 ILFSINTNNKMIYLFSYFFLMSSGKKNIN 63
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,645,851
Number of Sequences: 369166
Number of extensions: 553452
Number of successful extensions: 1646
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)