Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_G14
(308 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 prec... 33 0.20
sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-... 30 1.3
sp|O08999|LTBP2_MOUSE Latent transforming growth factor-bet... 30 1.3
sp|Q9XUC4|YGJK_CAEEL Hypothetical protein T28F3.3 in chromo... 30 2.3
sp|Q99466|NOTC4_HUMAN Neurogenic locus notch homolog protei... 29 3.9
sp|P11047|LAMC1_HUMAN Laminin gamma-1 chain precursor (Lami... 29 3.9
sp|Q80V70|EGFL3_MOUSE Multiple EGF-like-domain protein 3 29 3.9
sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testi... 29 3.9
sp|P02468|LAMC1_MOUSE Laminin gamma-1 chain precursor (Lami... 28 5.0
sp|P53284|YG3G_YEAST Hypothetical 13.2 kDa protein in PAS5-... 28 5.0
>sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
growth factor-like domains 6)
Length = 1574
Score = 33.1 bits (74), Expect = 0.20
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 62 PGVTAGHCDDGCHDTKAKPHCDDGCH 139
PGV+ HC+DGC HC CH
Sbjct: 591 PGVSGAHCEDGCPKGFYGKHCRKKCH 616
>sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1764
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 47 DDCHKPGVTAGHCDDGCHDTKAKPHCDDGCHAPGVKSDHCKD 172
D+C +PGV +G C +T+ HC+ V+ HC+D
Sbjct: 922 DECEQPGVCSG---GRCSNTEGSYHCECDQGYVMVRRGHCQD 960
>sp|O08999|LTBP2_MOUSE Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1813
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 47 DDCHKPGVTAGHCDDGCHDTKAKPHCDDGCHAPGVKSDHCKD 172
D+C +PGV +G C +T+ HC+ V+ HC+D
Sbjct: 923 DECEQPGVCSG---GRCSNTEGSYHCECDRGYIMVRKGHCQD 961
>sp|Q9XUC4|YGJK_CAEEL Hypothetical protein T28F3.3 in chromosome IV
Length = 393
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 161 DLTSHQEHDIHHHNEALLLYRDNHHRNAQ 75
+L H EHD HH+E L+ HR Q
Sbjct: 46 ELHDHHEHDHDHHDEQLIRKNHTSHREIQ 74
>sp|Q99466|NOTC4_HUMAN Neurogenic locus notch homolog protein 4 precursor (Notch 4)
(hNotch4) [Contains: Notch 4 extracellular truncation;
Notch 4 intracellular domain]
Length = 2003
Score = 28.9 bits (63), Expect = 3.9
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 50 DCHKPGVTAGHCDDGCHDTKAKPHCDDGCH 139
DC P D CHD HC+ GC+
Sbjct: 1244 DCETPPACTPAYDQYCHDHFHNGHCEKGCN 1273
>sp|P11047|LAMC1_HUMAN Laminin gamma-1 chain precursor (Laminin B2 chain)
Length = 1609
Score = 28.9 bits (63), Expect = 3.9
Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 21/63 (33%)
Frame = +2
Query: 50 DCHKPGVTAGHCDDGCHDTKAKP-----HCDD----------------GCHAPGVKSDHC 166
DCH G T G CD + +P HC+ CH G S C
Sbjct: 936 DCHALGSTNGQCDIRTGQCECQPGITGQHCERCEVNHFGFGPEGCKPCDCHPEGSLSLQC 995
Query: 167 KDD 175
KDD
Sbjct: 996 KDD 998
>sp|Q80V70|EGFL3_MOUSE Multiple EGF-like-domain protein 3
Length = 656
Score = 28.9 bits (63), Expect = 3.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 62 PGVTAGHCDDGCHDTKAKPHCDDGC 136
PG T GHC+ GC + C+ C
Sbjct: 410 PGKTGGHCERGCPQDRFGKGCEHKC 434
>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
Length = 355
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 191 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNH 48
+Q +D H + Q HD HHH + + D+H QQ + +D+H
Sbjct: 208 QQFHDHH--HQQQQQQFHDHHHHQQQQQQFHDHH----QQKQQFHDHH 249
>sp|P02468|LAMC1_MOUSE Laminin gamma-1 chain precursor (Laminin B2 chain)
Length = 1607
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 21/63 (33%)
Frame = +2
Query: 50 DCHKPGVTAGHCDDGCHDTKAKP-----HCDD----------------GCHAPGVKSDHC 166
DCH G T G CD + +P HC+ CH G S C
Sbjct: 934 DCHALGSTNGQCDIRTGQCECQPGITGQHCERCETNHFGFGPEGCKPCDCHHEGSLSLQC 993
Query: 167 KDD 175
KDD
Sbjct: 994 KDD 996
>sp|P53284|YG3G_YEAST Hypothetical 13.2 kDa protein in PAS5-CBF2 intergenic region
Length = 112
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 197 IIFTVKNNNYLVYIIIYFGLFRSRNMGIN 283
I+F++ NN ++Y+ YF L S IN
Sbjct: 35 ILFSINTNNKMIYLFSYFFLMSSGKKNIN 63
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,066,031
Number of Sequences: 369166
Number of extensions: 550604
Number of successful extensions: 1721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)