Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_O12
(240 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9XUC4|YGJK_CAEEL Hypothetical protein T28F3.3 in chromo... 30 2.3
sp|P53284|YG3G_YEAST Hypothetical 13.2 kDa protein in PAS5-... 28 5.1
sp||O46236_1 [Segment 1 of 2] Hunchback protein 28 5.1
sp|Q03403|TFF2_HUMAN Trefoil factor 2 precursor (Spasmolyti... 28 8.6
sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testi... 28 8.6
>sp|Q9XUC4|YGJK_CAEEL Hypothetical protein T28F3.3 in chromosome IV
Length = 393
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 93 DLTSHQEHDIHHHNEALLLYRDNHHRNAQ 7
+L H EHD HH+E L+ HR Q
Sbjct: 46 ELHDHHEHDHDHHDEQLIRKNHTSHREIQ 74
>sp|P53284|YG3G_YEAST Hypothetical 13.2 kDa protein in PAS5-CBF2 intergenic region
Length = 112
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 129 IIFTVKNNNYLVYIIIYFGLFRSRNMGIN 215
I+F++ NN ++Y+ YF L S IN
Sbjct: 35 ILFSINTNNKMIYLFSYFFLMSSGKKNIN 63
>sp||O46236_1 [Segment 1 of 2] Hunchback protein
Length = 99
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 84 SHQEHDIHHHNEALLLYRDNHHRNA 10
SH H HHH +L N +RNA
Sbjct: 16 SHHHHHSHHHGHHHMLQHSNSNRNA 40
>sp|Q03403|TFF2_HUMAN Trefoil factor 2 precursor (Spasmolytic polypeptide) (SP)
(Spasmolysin)
Length = 129
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 27 CHDTKAKPHCDDGCHAPGVKSDHCKDD 107
C ++ PH C PG+ SD C D+
Sbjct: 29 CQCSRLSPHNRTNCGFPGITSDQCFDN 55
>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
Length = 355
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 123 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQ 7
+Q +D H + Q HD HHH + + D+H + Q
Sbjct: 208 QQFHDHH--HQQQQQQFHDHHHHQQQQQQFHDHHQQKQQ 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,616,700
Number of Sequences: 369166
Number of extensions: 413950
Number of successful extensions: 1181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 68,354,980
effective HSP length: 50
effective length of database: 59,118,230
effective search space used: 1714428670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)