Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_A09
(342 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 prec... 33 0.20
sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testi... 31 0.78
sp|Q05738|SRY_MOUSE Sex-determining region Y protein (Testi... 31 1.0
sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-... 30 1.3
sp|O08999|LTBP2_MOUSE Latent transforming growth factor-bet... 30 1.3
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 30 1.3
sp|P0C061|GRSA_ANEMI Gramicidin S synthetase 1 (Gramicidin ... 30 1.7
sp|P0C062|GRSA_BREBE Gramicidin S synthetase 1 (Gramicidin ... 30 1.7
sp|Q9XUC4|YGJK_CAEEL Hypothetical protein T28F3.3 in chromo... 30 2.3
sp|Q8CRC8|RPIA_STAES Ribose-5-phosphate isomerase A (Phosph... 29 3.0
>sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
growth factor-like domains 6)
Length = 1574
Score = 33.1 bits (74), Expect = 0.20
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 96 PGVTAGHCDDGCHDTKAKPHCDDGCH 173
PGV+ HC+DGC HC CH
Sbjct: 591 PGVSGAHCEDGCPKGFYGKHCRKKCH 616
>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
Length = 355
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -1
Query: 180 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVF--QHDDVPFYHDH 28
Q+ H H + + D+HH+ QQ + +H F H +HDH
Sbjct: 196 QKQQFHDHQQQQQQFHDHHHQQQQQQFHDHHHHQQQQQQFHDHHQQKQQFHDH 248
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = -1
Query: 180 QEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQH---DDVPFYHDH 28
Q HD HHH + + D+HH QQ + +D+H H +HDH
Sbjct: 209 QFHD-HHHQQQQQQFHDHHHHQ-QQQQQFHDHHQQKQQFHDHHQQQQQQQFHDH 260
>sp|Q05738|SRY_MOUSE Sex-determining region Y protein (Testis-determining factor)
Length = 395
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/66 (24%), Positives = 25/66 (37%)
Frame = -1
Query: 225 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDV 46
+Q D H Q+ H H++ + D HH+ QQ + +H H
Sbjct: 163 QQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHD-HHQQQQQFHDHHHHHQEQQFHDHHQQQ 221
Query: 45 PFYHDH 28
+HDH
Sbjct: 222 QQFHDH 227
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Frame = -1
Query: 225 KQINDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVF----Q 58
+Q +D H HQE H H++ + D+ + QQ + + +H F
Sbjct: 200 QQFHDHH-----HHHQEQQFHDHHQQQQQFHDHQQQQQQQQQQQFHDHHQQKQQFHDHHH 254
Query: 57 HDDVPFYHDH 28
H +HDH
Sbjct: 255 HQQQQQFHDH 264
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = -1
Query: 219 INDSHLCNDLTSHQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPF 40
I HL Q+ H+H++ + D+H + QQ + H + H
Sbjct: 138 IPTGHLQQQQQQQQQQQFHNHHQQQQQFYDHHQQQQQQQQQQQQFHDH------HQQKQQ 191
Query: 39 YHDH 28
+HDH
Sbjct: 192 FHDH 195
>sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1764
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 81 DDCHKPGVTAGHCDDGCHDTKAKPHCDDGCHAPGVKSDHCKD 206
D+C +PGV +G C +T+ HC+ V+ HC+D
Sbjct: 922 DECEQPGVCSG---GRCSNTEGSYHCECDQGYVMVRRGHCQD 960
>sp|O08999|LTBP2_MOUSE Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1813
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 81 DDCHKPGVTAGHCDDGCHDTKAKPHCDDGCHAPGVKSDHCKD 206
D+C +PGV +G C +T+ HC+ V+ HC+D
Sbjct: 923 DECEQPGVCSG---GRCSNTEGSYHCECDRGYIMVRKGHCQD 961
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -1
Query: 183 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 28
H HD HHH+ + D HH + + +H ++A H +H H
Sbjct: 289 HHHHDAHHHHHH---HHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHH 337
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 183 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 28
H+EH HHH + ++HH + + +H + L + H P +H H
Sbjct: 130 HEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHH--HHLGYHHHHAPHHHHH 179
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -1
Query: 183 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 28
H HD HHH+ + D HH + + +H ++A H +H H
Sbjct: 279 HHHHDAHHHHHH---HHDAHHHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHH 327
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1
Query: 183 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 28
H HD HHH+ + D HH + +D H ++ H D +H H
Sbjct: 299 HHHHDAHHHHH----HHDAHHHHHHH----HDAHHHH---HHHHDAHHHHHH 339
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = -1
Query: 183 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 28
H H HHH+ L + +HH A +H ++A H + +H H
Sbjct: 104 HHHHPPHHHHH--LGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHHHHH 153
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1
Query: 183 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 28
H HD HHH+ + D HH + +D H ++ H D +H H
Sbjct: 249 HHHHDAHHHHHH---HHDAHHHHHHH----HDAHHHH---HHHHDAHHHHHH 290
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -1
Query: 183 HQEHDIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDH 28
H HD HHH+ + D HH + +D H ++ H D +H H
Sbjct: 269 HHHHDAHHHHHH---HHDAHHHHHHH----HDAHHHH---HHHHDAHHHHHH 310
>sp|P0C061|GRSA_ANEMI Gramicidin S synthetase 1 (Gramicidin S synthetase I) [Includes:
ATP-dependent D-phenylalanine adenylase (D-PheA)
(D-phenylalanine activase); Phenylalanine racemase
[ATP-hydrolyzing] ]
Length = 1098
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -1
Query: 171 DIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDHGN 22
++HH N++ +LYR N + + LLRV +N +V HD + + H N
Sbjct: 640 NMHHWNQSYMLYRPNGF-DKEILLRV-----FNKIVEHHDALRMIYKHHN 683
>sp|P0C062|GRSA_BREBE Gramicidin S synthetase 1 (Gramicidin S synthetase I) [Includes:
ATP-dependent D-phenylalanine adenylase (D-PheA)
(D-phenylalanine activase); Phenylalanine racemase
[ATP-hydrolyzing] ]
Length = 1098
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -1
Query: 171 DIHHHNEALLLYRDNHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDHGN 22
++HH N++ +LYR N + + LLRV +N +V HD + + H N
Sbjct: 640 NMHHWNQSYMLYRPNGF-DKEILLRV-----FNKIVEHHDALRMIYKHHN 683
>sp|Q9XUC4|YGJK_CAEEL Hypothetical protein T28F3.3 in chromosome IV
Length = 393
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 195 DLTSHQEHDIHHHNEALLLYRDNHHRNAQ 109
+L H EHD HH+E L+ HR Q
Sbjct: 46 ELHDHHEHDHDHHDEQLIRKNHTSHREIQ 74
>sp|Q8CRC8|RPIA_STAES Ribose-5-phosphate isomerase A (Phosphoriboisomerase A) (PRI)
sp|Q5HLQ9|RPIA_STAEQ Ribose-5-phosphate isomerase A (Phosphoriboisomerase A) (PRI)
Length = 230
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = -1
Query: 129 NHHRNAQQLLRVYDNHLYNALVFQHDDVPFYHDHGNVLL 13
N ++ A+++ R YD H+ + ++DVPF D+GN +L
Sbjct: 144 NWYQVAKKIERTYDIHVSRRV---NEDVPFITDNGNYIL 179
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,083,719
Number of Sequences: 369166
Number of extensions: 610029
Number of successful extensions: 1929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)