Planaria EST Database

DrC_00593

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00593
         (508 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P63325|RS10_MOUSE  40S ribosomal protein S10 >gi|54039307...   120   2e-27
sp|P46783|RS10_HUMAN  40S ribosomal protein S10                   120   2e-27
sp|Q07254|RS10_XENLA  40S ribosomal protein S10                   120   2e-27
sp|Q962R9|RS10_SPOFR  40S ribosomal protein S10                   119   3e-27
sp|Q90YR4|RS10_ICTPU  40S ribosomal protein S10                   116   3e-26
sp|O77302|RS10_LUMRU  40S ribosomal protein S10                   114   1e-25
sp|Q9AYP4|RS10_ORYSA  40S ribosomal protein S10                   110   1e-24
sp|P30427|PLEC1_RAT  Plectin 1 (PLTN) (PCN)                       110   2e-24
sp|Q9QXS1|PLEC1_MOUSE  Plectin 1 (PLTN) (PCN)                     109   4e-24
sp|Q9VWG3|RS10B_DROME  40S ribosomal protein S10b                 108   5e-24

>sp|P63325|RS10_MOUSE 40S ribosomal protein S10
 sp|P63326|RS10_RAT 40S ribosomal protein S10
          Length = 165

 Score =  120 bits (301), Expect = 2e-27
 Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVR 201
           ML+P   R  I+E LF+ GVM AKKDV     HPE+    V NL+V+KA+QSLKS+ YV+
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVK 59

Query: 202 EQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 351
           EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+   RP   G
Sbjct: 60  EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108

>sp|P46783|RS10_HUMAN 40S ribosomal protein S10
          Length = 165

 Score =  120 bits (301), Expect = 2e-27
 Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVR 201
           ML+P   R  I+E LF+ GVM AKKDV     HPE+    V NL+V+KA+QSLKS+ YV+
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVK 59

Query: 202 EQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 351
           EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+   RP   G
Sbjct: 60  EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108

>sp|Q07254|RS10_XENLA 40S ribosomal protein S10
          Length = 165

 Score =  120 bits (300), Expect = 2e-27
 Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVR 201
           ML+P   R  I+E LF+ GVM AKKDV     HPE+    V NL+V+KA+QSLKS+ YV+
Sbjct: 1   MLMPKKDRIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVK 59

Query: 202 EQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 351
           EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+   RP   G
Sbjct: 60  EQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPET-GRPRPKG 108

>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10
          Length = 158

 Score =  119 bits (299), Expect = 3e-27
 Identities = 66/115 (57%), Positives = 78/115 (67%), Gaps = 13/115 (11%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV-KVKNLYVIKALQSLKSKNYVREQ 207
           ML+P   R  I+E LF+ GVM AKKD      HP++ K+ NL VIKA+QSLKS+ YV+EQ
Sbjct: 1   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQ 59

Query: 208 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKAS------------RPDAPAR 336
           FAWR +YW+L NEGI YLR  LHLP EIVPAT+K S            RPDAPAR
Sbjct: 60  FAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRRGAVGRPDAPAR 114

>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10
          Length = 166

 Score =  116 bits (290), Expect = 3e-26
 Identities = 63/110 (57%), Positives = 76/110 (69%), Gaps = 3/110 (2%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVR 201
           ML+P   R  I+E LF+ GVM AKKDV   A HPE+    V NL+V+KA+QSLKS  YV+
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHL-AKHPELADKNVPNLHVMKAMQSLKSCGYVK 59

Query: 202 EQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 351
           EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++       ARP   G
Sbjct: 60  EQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARPRPKG 109

>sp|O77302|RS10_LUMRU 40S ribosomal protein S10
          Length = 156

 Score =  114 bits (285), Expect = 1e-25
 Identities = 64/121 (52%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQF 210
           ML+    R  I+E LF+ GV+ AKKD      H E+ V NL+VI+A+QSL S+ YV+EQF
Sbjct: 1   MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPK-HGEIDVPNLHVIRAMQSLVSRGYVKEQF 59

Query: 211 AWRSYYWFLNNEGITYLRENLHLPAEIVPATMK-ASRPDAPARPTVGGSPRTALTGAYRT 387
            WR YYW+L NEGI YLR+ LHLP EIVPAT+K  +RP+A       G+PR A  G  R 
Sbjct: 60  CWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGAPR-AQVGEDRA 118

Query: 388 G 390
           G
Sbjct: 119 G 119

>sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10
          Length = 183

 Score =  110 bits (276), Expect = 1e-24
 Identities = 60/110 (54%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQF 210
           M+IP   RN+I + LF+ GV+ AKKD    A HP++ V NL VIK +QS KSK YVRE F
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNL-AKHPQIDVPNLQVIKFMQSFKSKEYVRETF 59

Query: 211 AWRSYYWFLNNEGITYLRENLHLPAEIVPATMKAS-RPDAPARPTVGGSP 357
           +W+ YYW+L N+GI +L   L+LP+EIVPAT+K S RP  P RP   G P
Sbjct: 60  SWQYYYWYLTNDGIEHLLNYLNLPSEIVPATLKKSARP--PGRPFGSGPP 107

>sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN)
          Length = 4687

 Score =  110 bits (274), Expect = 2e-24
 Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQ 207
           ML+P D    I+E LF  GVM AKKD RP ++HP V  V NL V++A+ SLK++  VRE 
Sbjct: 5   MLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRET 64

Query: 208 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 357
           FAW  +YW+L NEGI +LR+ LHLP EIVPA++ +  RP A   P    SP
Sbjct: 65  FAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRRSP 115

>sp|Q9QXS1|PLEC1_MOUSE Plectin 1 (PLTN) (PCN)
          Length = 964

 Score =  109 bits (272), Expect = 4e-24
 Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQ 207
           ML+P D    I+E LF  GVM AKKD RP ++HP V  V NL V++A+ SLK++  VRE 
Sbjct: 5   MLMPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRET 64

Query: 208 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 357
           FAW  +YW+L NEGI +LR+ LHLP EIVPA++ +  RP A   P    SP
Sbjct: 65  FAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSP 115

>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b
          Length = 160

 Score =  108 bits (271), Expect = 5e-24
 Identities = 68/140 (48%), Positives = 85/140 (60%), Gaps = 3/140 (2%)
 Frame = +1

Query: 31  MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQ 207
           M +P   R  I+E LF+ GV+ AKKD      HPE++ + NL+VIKA+QSL S+  V+EQ
Sbjct: 1   MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQK-HPELESIPNLHVIKAMQSLHSRGLVKEQ 59

Query: 208 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATMK--ASRPDAPARPTVGGSPRTALTGAY 381
           FAWR YYW+L NEGI  LR  LHLP EIVP+T+K  A       RP VGG PR     A 
Sbjct: 60  FAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGG-PR-GPGDAS 117

Query: 382 RTGNTANMSEAVMKDAPGDS 441
           +TG       +  + APG S
Sbjct: 118 KTGE----DRSAYRRAPGGS 133

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,869,484
Number of Sequences: 369166
Number of extensions: 1010397
Number of successful extensions: 3141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3122
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00593

  1. Dr_sW_001_C23
  2. Dr_sW_015_H12
  3. Dr_sW_015_I09
  4. Dr_sW_004_K24
  5. Dr_sW_009_G08
  6. Dr_sW_025_P19
  7. Dr_sW_005_O09
  8. Dr_sW_005_L12
  9. Dr_sW_021_I18
  10. Dr_sW_021_G21
  11. Dr_sW_025_N15
  12. Dr_sW_027_P03
  13. Dr_sW_017_K16
  14. Dr_sW_016_G17
  15. Dr_sW_006_M14
  16. Dr_sW_027_H22