Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_K24
(473 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63325|RS10_MOUSE 40S ribosomal protein S10 >gi|54039307... 117 2e-26
sp|P46783|RS10_HUMAN 40S ribosomal protein S10 117 2e-26
sp|Q07254|RS10_XENLA 40S ribosomal protein S10 116 2e-26
sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 116 3e-26
sp|O77302|RS10_LUMRU 40S ribosomal protein S10 112 3e-25
sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 112 3e-25
sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10 108 8e-24
sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b 107 2e-23
sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN) 106 2e-23
sp|Q9QXS1|PLEC1_MOUSE Plectin 1 (PLTN) (PCN) 105 4e-23
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10
sp|P63326|RS10_RAT 40S ribosomal protein S10
Length = 165
Score = 117 bits (292), Expect = 2e-26
Identities = 62/108 (57%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Frame = +2
Query: 2 IPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQ 172
+P R I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQ
Sbjct: 3 MPKKNRIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQ 61
Query: 173 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 316
FAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 62 FAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10
Length = 165
Score = 117 bits (292), Expect = 2e-26
Identities = 62/108 (57%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Frame = +2
Query: 2 IPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQ 172
+P R I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQ
Sbjct: 3 MPKKNRIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQ 61
Query: 173 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 316
FAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 62 FAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10
Length = 165
Score = 116 bits (291), Expect = 2e-26
Identities = 62/108 (57%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
Frame = +2
Query: 2 IPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQ 172
+P R I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQ
Sbjct: 3 MPKKDRIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQ 61
Query: 173 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 316
FAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 62 FAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10
Length = 158
Score = 116 bits (290), Expect = 3e-26
Identities = 64/113 (56%), Positives = 76/113 (67%), Gaps = 13/113 (11%)
Frame = +2
Query: 2 IPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV-KVKNLYVIKALQSLKSKNYVREQFA 178
+P R I+E LF+ GVM AKKD HP++ K+ NL VIKA+QSLKS+ YV+EQFA
Sbjct: 3 MPKQNRVAIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQFA 61
Query: 179 WRSYYWFLNNEGITYLRENLHLPAEIVPATMKAS------------RPDAPAR 301
WR +YW+L NEGI YLR LHLP EIVPAT+K S RPDAPAR
Sbjct: 62 WRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRRGAVGRPDAPAR 114
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10
Length = 156
Score = 112 bits (281), Expect = 3e-25
Identities = 62/114 (54%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Frame = +2
Query: 17 RNKIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQFAWRSYYW 196
R I+E LF+ GV+ AKKD H E+ V NL+VI+A+QSL S+ YV+EQF WR YYW
Sbjct: 8 RVMIYEYLFKEGVLVAKKDFHLPK-HGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYW 66
Query: 197 FLNNEGITYLRENLHLPAEIVPATMK-ASRPDAPARPTVGGSPRTALTGAYRTG 355
+L NEGI YLR+ LHLP EIVPAT+K +RP+A G+PR A G R G
Sbjct: 67 YLQNEGIQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGAPR-AQVGEDRAG 119
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10
Length = 166
Score = 112 bits (281), Expect = 3e-25
Identities = 61/108 (56%), Positives = 74/108 (68%), Gaps = 3/108 (2%)
Frame = +2
Query: 2 IPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQ 172
+P R I+E LF+ GVM AKKDV A HPE+ V NL+V+KA+QSLKS YV+EQ
Sbjct: 3 MPKKNRIAIYELLFKEGVMVAKKDVHL-AKHPELADKNVPNLHVMKAMQSLKSCGYVKEQ 61
Query: 173 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 316
FAWR +YW+L NEGI YLR+ LHLP EIVPAT++ ARP G
Sbjct: 62 FAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARPRPKG 109
>sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10
Length = 183
Score = 108 bits (269), Expect = 8e-24
Identities = 59/108 (54%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Frame = +2
Query: 2 IPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQFAW 181
IP RN+I + LF+ GV+ AKKD A HP++ V NL VIK +QS KSK YVRE F+W
Sbjct: 3 IPKKNRNEICKYLFQEGVLYAKKDYNL-AKHPQIDVPNLQVIKFMQSFKSKEYVRETFSW 61
Query: 182 RSYYWFLNNEGITYLRENLHLPAEIVPATMKAS-RPDAPARPTVGGSP 322
+ YYW+L N+GI +L L+LP+EIVPAT+K S RP P RP G P
Sbjct: 62 QYYYWYLTNDGIEHLLNYLNLPSEIVPATLKKSARP--PGRPFGSGPP 107
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b
Length = 160
Score = 107 bits (266), Expect = 2e-23
Identities = 67/138 (48%), Positives = 84/138 (60%), Gaps = 3/138 (2%)
Frame = +2
Query: 2 IPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFA 178
+P R I+E LF+ GV+ AKKD HPE++ + NL+VIKA+QSL S+ V+EQFA
Sbjct: 3 MPKAHRVAIYEYLFKEGVIVAKKDFHAQK-HPELESIPNLHVIKAMQSLHSRGLVKEQFA 61
Query: 179 WRSYYWFLNNEGITYLRENLHLPAEIVPATMK--ASRPDAPARPTVGGSPRTALTGAYRT 352
WR YYW+L NEGI LR LHLP EIVP+T+K A RP VGG PR A +T
Sbjct: 62 WRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGG-PR-GPGDASKT 119
Query: 353 GNTANMSEAVMKDAPGDS 406
G + + APG S
Sbjct: 120 GE----DRSAYRRAPGGS 133
>sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN)
Length = 4687
Score = 106 bits (265), Expect = 2e-23
Identities = 56/109 (51%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
Frame = +2
Query: 2 IPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFA 178
+P D I+E LF GVM AKKD RP ++HP V V NL V++A+ SLK++ VRE FA
Sbjct: 7 MPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRETFA 66
Query: 179 WRSYYWFLNNEGITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 322
W +YW+L NEGI +LR+ LHLP EIVPA++ + RP A P SP
Sbjct: 67 WCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRRSP 115
>sp|Q9QXS1|PLEC1_MOUSE Plectin 1 (PLTN) (PCN)
Length = 964
Score = 105 bits (263), Expect = 4e-23
Identities = 56/109 (51%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
Frame = +2
Query: 2 IPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFA 178
+P D I+E LF GVM AKKD RP ++HP V V NL V++A+ SLK++ VRE FA
Sbjct: 7 MPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRETFA 66
Query: 179 WRSYYWFLNNEGITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 322
W +YW+L NEGI +LR+ LHLP EIVPA++ + RP A P SP
Sbjct: 67 WCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSP 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,100,538
Number of Sequences: 369166
Number of extensions: 923063
Number of successful extensions: 2960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2941
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)