Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_O09
(331 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63325|RS10_MOUSE 40S ribosomal protein S10 >gi|54039307... 82 5e-16
sp|P46783|RS10_HUMAN 40S ribosomal protein S10 82 5e-16
sp|Q07254|RS10_XENLA 40S ribosomal protein S10 81 6e-16
sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 80 1e-15
sp|O77302|RS10_LUMRU 40S ribosomal protein S10 79 2e-15
sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 76 2e-14
sp|Q9FFS8|RS10B_ARATH 40S ribosomal protein S10-2 73 2e-13
sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b 72 4e-13
sp|Q9SW09|RS10A_ARATH 40S ribosomal protein S10-1 72 5e-13
sp|Q9LTF2|RS10C_ARATH 40S ribosomal protein S10-3 72 5e-13
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10
sp|P63326|RS10_RAT 40S ribosomal protein S10
Length = 165
Score = 81.6 bits (200), Expect = 5e-16
Identities = 37/58 (63%), Positives = 45/58 (77%)
Frame = +1
Query: 1 LKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 174
LKS+ YV+EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 52 LKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10
Length = 165
Score = 81.6 bits (200), Expect = 5e-16
Identities = 37/58 (63%), Positives = 45/58 (77%)
Frame = +1
Query: 1 LKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 174
LKS+ YV+EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 52 LKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10
Length = 165
Score = 81.3 bits (199), Expect = 6e-16
Identities = 37/58 (63%), Positives = 45/58 (77%)
Frame = +1
Query: 1 LKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 174
LKS+ YV+EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 52 LKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10
Length = 158
Score = 80.5 bits (197), Expect = 1e-15
Identities = 40/65 (61%), Positives = 45/65 (69%), Gaps = 12/65 (18%)
Frame = +1
Query: 1 LKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKAS------------RP 144
LKS+ YV+EQFAWR +YW+L NEGI YLR LHLP EIVPAT+K S RP
Sbjct: 50 LKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRRGAVGRP 109
Query: 145 DAPAR 159
DAPAR
Sbjct: 110 DAPAR 114
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10
Length = 156
Score = 79.3 bits (194), Expect = 2e-15
Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 LKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMK-ASRPDAPARPTVGGS 177
L S+ YV+EQF WR YYW+L NEGI YLR+ LHLP EIVPAT+K +RP+A G+
Sbjct: 49 LVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGA 108
Query: 178 PRTALTGAYRTG 213
PR A G R G
Sbjct: 109 PR-AQVGEDRAG 119
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10
Length = 166
Score = 76.3 bits (186), Expect = 2e-14
Identities = 35/58 (60%), Positives = 41/58 (70%)
Frame = +1
Query: 1 LKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 174
LKS YV+EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ ARP G
Sbjct: 52 LKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARPRPKG 109
>sp|Q9FFS8|RS10B_ARATH 40S ribosomal protein S10-2
Length = 180
Score = 73.2 bits (178), Expect = 2e-13
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = +1
Query: 4 KSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGGSPR 183
KSK YVRE FAW YYWFL NEGI +LR L+LP+EIVPAT+K + RP GG R
Sbjct: 51 KSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPL-GRPFGGGGDR 109
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b
Length = 160
Score = 72.0 bits (175), Expect = 4e-13
Identities = 44/90 (48%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Frame = +1
Query: 1 LKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMK--ASRPDAPARPTVGG 174
L S+ V+EQFAWR YYW+L NEGI LR LHLP EIVP+T+K A RP VGG
Sbjct: 50 LHSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGG 109
Query: 175 SPRTALTGAYRTGNTANMSEAVMKDAPGDS 264
PR A +TG + + APG S
Sbjct: 110 -PR-GPGDASKTGE----DRSAYRRAPGGS 133
>sp|Q9SW09|RS10A_ARATH 40S ribosomal protein S10-1
Length = 177
Score = 71.6 bits (174), Expect = 5e-13
Identities = 36/69 (52%), Positives = 43/69 (62%)
Frame = +1
Query: 4 KSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGGSPR 183
KSK YVRE FAW YYWFL NEGI +LR L+LP+++VPAT+K S P GG P
Sbjct: 50 KSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA--KPGGRPFGGPPG 107
Query: 184 TALTGAYRT 210
G R+
Sbjct: 108 DRQRGPPRS 116
>sp|Q9LTF2|RS10C_ARATH 40S ribosomal protein S10-3
Length = 181
Score = 71.6 bits (174), Expect = 5e-13
Identities = 36/70 (51%), Positives = 42/70 (60%)
Frame = +1
Query: 4 KSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGGSPR 183
KSK YVRE FAW YYWFL NEGI +LR L+LP+++VPAT+K S P GG P
Sbjct: 50 KSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA--KPGGRPFGGPPG 107
Query: 184 TALTGAYRTG 213
G G
Sbjct: 108 DRSRGPRHEG 117
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,707,333
Number of Sequences: 369166
Number of extensions: 535667
Number of successful extensions: 2005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2004
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)