Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_L12
(349 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63325|RS10_MOUSE 40S ribosomal protein S10 >gi|54039307... 90 2e-18
sp|P46783|RS10_HUMAN 40S ribosomal protein S10 90 2e-18
sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 90 2e-18
sp|Q07254|RS10_XENLA 40S ribosomal protein S10 89 2e-18
sp|O77302|RS10_LUMRU 40S ribosomal protein S10 87 9e-18
sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 84 8e-17
sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b 81 6e-16
sp|Q9FFS8|RS10B_ARATH 40S ribosomal protein S10-2 80 1e-15
sp|Q9SW09|RS10A_ARATH 40S ribosomal protein S10-1 79 3e-15
sp|Q9LTF2|RS10C_ARATH 40S ribosomal protein S10-3 79 3e-15
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10
sp|P63326|RS10_RAT 40S ribosomal protein S10
Length = 165
Score = 89.7 bits (221), Expect = 2e-18
Identities = 41/64 (64%), Positives = 51/64 (79%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARP 180
+KA+QSLKS+ YV+EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP
Sbjct: 46 MKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRP 104
Query: 181 TVGG 192
G
Sbjct: 105 RPKG 108
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10
Length = 165
Score = 89.7 bits (221), Expect = 2e-18
Identities = 41/64 (64%), Positives = 51/64 (79%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARP 180
+KA+QSLKS+ YV+EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP
Sbjct: 46 MKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRP 104
Query: 181 TVGG 192
G
Sbjct: 105 RPKG 108
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10
Length = 158
Score = 89.7 bits (221), Expect = 2e-18
Identities = 45/71 (63%), Positives = 51/71 (71%), Gaps = 12/71 (16%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKAS-------- 156
IKA+QSLKS+ YV+EQFAWR +YW+L NEGI YLR LHLP EIVPAT+K S
Sbjct: 44 IKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRR 103
Query: 157 ----RPDAPAR 177
RPDAPAR
Sbjct: 104 GAVGRPDAPAR 114
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10
Length = 165
Score = 89.4 bits (220), Expect = 2e-18
Identities = 41/64 (64%), Positives = 51/64 (79%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARP 180
+KA+QSLKS+ YV+EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP
Sbjct: 46 MKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPET-GRP 104
Query: 181 TVGG 192
G
Sbjct: 105 RPKG 108
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10
Length = 156
Score = 87.4 bits (215), Expect = 9e-18
Identities = 45/78 (57%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMK-ASRPDAPAR 177
I+A+QSL S+ YV+EQF WR YYW+L NEGI YLR+ LHLP EIVPAT+K +RP+A
Sbjct: 43 IRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPEAARP 102
Query: 178 PTVGGSPRTALTGAYRTG 231
G+PR A G R G
Sbjct: 103 RPKEGAPR-AQVGEDRAG 119
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10
Length = 166
Score = 84.3 bits (207), Expect = 8e-17
Identities = 39/64 (60%), Positives = 47/64 (73%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARP 180
+KA+QSLKS YV+EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ ARP
Sbjct: 46 MKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARP 105
Query: 181 TVGG 192
G
Sbjct: 106 RPKG 109
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b
Length = 160
Score = 81.3 bits (199), Expect = 6e-16
Identities = 49/96 (51%), Positives = 58/96 (60%), Gaps = 2/96 (2%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMK--ASRPDAPA 174
IKA+QSL S+ V+EQFAWR YYW+L NEGI LR LHLP EIVP+T+K A
Sbjct: 44 IKAMQSLHSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRP 103
Query: 175 RPTVGGSPRTALTGAYRTGNTANMSEAVMKDAPGDS 282
RP VGG PR A +TG + + APG S
Sbjct: 104 RPAVGG-PR-GPGDASKTGE----DRSAYRRAPGGS 133
>sp|Q9FFS8|RS10B_ARATH 40S ribosomal protein S10-2
Length = 180
Score = 80.5 bits (197), Expect = 1e-15
Identities = 40/67 (59%), Positives = 46/67 (68%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARP 180
IK +QS KSK YVRE FAW YYWFL NEGI +LR L+LP+EIVPAT+K + RP
Sbjct: 44 IKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPL-GRP 102
Query: 181 TVGGSPR 201
GG R
Sbjct: 103 FGGGGDR 109
>sp|Q9SW09|RS10A_ARATH 40S ribosomal protein S10-1
Length = 177
Score = 79.0 bits (193), Expect = 3e-15
Identities = 40/76 (52%), Positives = 48/76 (63%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARP 180
IK +QS KSK YVRE FAW YYWFL NEGI +LR L+LP+++VPAT+K S P
Sbjct: 43 IKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA--KPGGR 100
Query: 181 TVGGSPRTALTGAYRT 228
GG P G R+
Sbjct: 101 PFGGPPGDRQRGPPRS 116
>sp|Q9LTF2|RS10C_ARATH 40S ribosomal protein S10-3
Length = 181
Score = 79.0 bits (193), Expect = 3e-15
Identities = 40/77 (51%), Positives = 47/77 (61%)
Frame = +1
Query: 1 IKALQSLKSKNYVREQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARP 180
IK +QS KSK YVRE FAW YYWFL NEGI +LR L+LP+++VPAT+K S P
Sbjct: 43 IKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA--KPGGR 100
Query: 181 TVGGSPRTALTGAYRTG 231
GG P G G
Sbjct: 101 PFGGPPGDRSRGPRHEG 117
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,259,400
Number of Sequences: 369166
Number of extensions: 567483
Number of successful extensions: 2082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)