Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_K16
(465 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63325|RS10_MOUSE 40S ribosomal protein S10 >gi|54039307... 115 4e-26
sp|P46783|RS10_HUMAN 40S ribosomal protein S10 115 4e-26
sp|Q07254|RS10_XENLA 40S ribosomal protein S10 115 5e-26
sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 114 8e-26
sp|O77302|RS10_LUMRU 40S ribosomal protein S10 112 3e-25
sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 111 7e-25
sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b 106 3e-23
sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10 105 4e-23
sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN) 103 1e-22
sp|P46784|RS10B_YEAST 40S ribosomal protein S10-B 103 2e-22
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10
sp|P63326|RS10_RAT 40S ribosomal protein S10
Length = 165
Score = 115 bits (289), Expect = 4e-26
Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 3/103 (2%)
Frame = +3
Query: 9 RNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRS 179
R I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQFAWR
Sbjct: 8 RIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRH 66
Query: 180 YYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 308
+YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 67 FYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10
Length = 165
Score = 115 bits (289), Expect = 4e-26
Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 3/103 (2%)
Frame = +3
Query: 9 RNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRS 179
R I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQFAWR
Sbjct: 8 RIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRH 66
Query: 180 YYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 308
+YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 67 FYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10
Length = 165
Score = 115 bits (288), Expect = 5e-26
Identities = 61/103 (59%), Positives = 75/103 (72%), Gaps = 3/103 (2%)
Frame = +3
Query: 9 RNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRS 179
R I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQFAWR
Sbjct: 8 RIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRH 66
Query: 180 YYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 308
+YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 67 FYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10
Length = 158
Score = 114 bits (286), Expect = 8e-26
Identities = 63/108 (58%), Positives = 74/108 (68%), Gaps = 13/108 (12%)
Frame = +3
Query: 9 RNKIHENLFESGVMTAKKDVRPNAIHPEV-KVKNLYVIKALQSLKSKNYVREQFAWRSYY 185
R I+E LF+ GVM AKKD HP++ K+ NL VIKA+QSLKS+ YV+EQFAWR +Y
Sbjct: 8 RVAIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFY 66
Query: 186 WFLNNEGITYLRENLHLPAEIVPATMKAS------------RPDAPAR 293
W+L NEGI YLR LHLP EIVPAT+K S RPDAPAR
Sbjct: 67 WYLTNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRRGAVGRPDAPAR 114
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10
Length = 156
Score = 112 bits (281), Expect = 3e-25
Identities = 62/114 (54%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Frame = +3
Query: 9 RNKIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQFAWRSYYW 188
R I+E LF+ GV+ AKKD H E+ V NL+VI+A+QSL S+ YV+EQF WR YYW
Sbjct: 8 RVMIYEYLFKEGVLVAKKDFHLPK-HGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYW 66
Query: 189 FLNNEGITYLRENLHLPAEIVPATMK-ASRPDAPARPTVGGSPRTALTGAYRTG 347
+L NEGI YLR+ LHLP EIVPAT+K +RP+A G+PR A G R G
Sbjct: 67 YLQNEGIQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGAPR-AQVGEDRAG 119
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10
Length = 166
Score = 111 bits (278), Expect = 7e-25
Identities = 60/103 (58%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Frame = +3
Query: 9 RNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRS 179
R I+E LF+ GVM AKKDV A HPE+ V NL+V+KA+QSLKS YV+EQFAWR
Sbjct: 8 RIAIYELLFKEGVMVAKKDVHL-AKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRH 66
Query: 180 YYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 308
+YW+L NEGI YLR+ LHLP EIVPAT++ ARP G
Sbjct: 67 FYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARPRPKG 109
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b
Length = 160
Score = 106 bits (264), Expect = 3e-23
Identities = 66/133 (49%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Frame = +3
Query: 9 RNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFAWRSYY 185
R I+E LF+ GV+ AKKD HPE++ + NL+VIKA+QSL S+ V+EQFAWR YY
Sbjct: 8 RVAIYEYLFKEGVIVAKKDFHAQK-HPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYY 66
Query: 186 WFLNNEGITYLRENLHLPAEIVPATMK--ASRPDAPARPTVGGSPRTALTGAYRTGNTAN 359
W+L NEGI LR LHLP EIVP+T+K A RP VGG PR A +TG
Sbjct: 67 WYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGG-PR-GPGDASKTGE--- 121
Query: 360 MSEAVMKDAPGDS 398
+ + APG S
Sbjct: 122 -DRSAYRRAPGGS 133
>sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10
Length = 183
Score = 105 bits (263), Expect = 4e-23
Identities = 57/103 (55%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Frame = +3
Query: 9 RNKIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQFAWRSYYW 188
RN+I + LF+ GV+ AKKD A HP++ V NL VIK +QS KSK YVRE F+W+ YYW
Sbjct: 8 RNEICKYLFQEGVLYAKKDYNL-AKHPQIDVPNLQVIKFMQSFKSKEYVRETFSWQYYYW 66
Query: 189 FLNNEGITYLRENLHLPAEIVPATMKAS-RPDAPARPTVGGSP 314
+L N+GI +L L+LP+EIVPAT+K S RP P RP G P
Sbjct: 67 YLTNDGIEHLLNYLNLPSEIVPATLKKSARP--PGRPFGSGPP 107
>sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN)
Length = 4687
Score = 103 bits (258), Expect = 1e-22
Identities = 54/101 (53%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +3
Query: 18 IHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFAWRSYYWFL 194
I+E LF GVM AKKD RP ++HP V V NL V++A+ SLK++ VRE FAW +YW+L
Sbjct: 15 IYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYL 74
Query: 195 NNEGITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 314
NEGI +LR+ LHLP EIVPA++ + RP A P SP
Sbjct: 75 TNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRRSP 115
>sp|P46784|RS10B_YEAST 40S ribosomal protein S10-B
Length = 105
Score = 103 bits (256), Expect = 2e-22
Identities = 51/84 (60%), Positives = 61/84 (72%)
Frame = +3
Query: 9 RNKIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQFAWRSYYW 188
RNKIH+ LF+ GV+ AKKD A H E+ KNLYVIKALQSL SK YV+ QF+W+ YY+
Sbjct: 8 RNKIHQYLFQEGVVVAKKDFN-QAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYY 66
Query: 189 FLNNEGITYLRENLHLPAEIVPAT 260
L EG+ YLRE L+LP IVP T
Sbjct: 67 TLTEEGVEYLREYLNLPEHIVPGT 90
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,967,792
Number of Sequences: 369166
Number of extensions: 890514
Number of successful extensions: 2895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2876
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)