Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_N15
(453 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63325|RS10_MOUSE 40S ribosomal protein S10 >gi|54039307... 115 4e-26
sp|P46783|RS10_HUMAN 40S ribosomal protein S10 115 4e-26
sp|Q07254|RS10_XENLA 40S ribosomal protein S10 115 6e-26
sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 114 1e-25
sp|O77302|RS10_LUMRU 40S ribosomal protein S10 112 4e-25
sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 111 8e-25
sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b 105 4e-23
sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN) 103 1e-22
sp|Q9QXS1|PLEC1_MOUSE Plectin 1 (PLTN) (PCN) 103 2e-22
sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10 101 7e-22
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10
sp|P63326|RS10_RAT 40S ribosomal protein S10
Length = 165
Score = 115 bits (288), Expect = 4e-26
Identities = 60/100 (60%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Frame = +3
Query: 6 IHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRSYYW 176
I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQFAWR +YW
Sbjct: 11 IYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYW 69
Query: 177 FLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 296
+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 70 YLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10
Length = 165
Score = 115 bits (288), Expect = 4e-26
Identities = 60/100 (60%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Frame = +3
Query: 6 IHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRSYYW 176
I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQFAWR +YW
Sbjct: 11 IYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYW 69
Query: 177 FLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 296
+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 70 YLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10
Length = 165
Score = 115 bits (287), Expect = 6e-26
Identities = 60/100 (60%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Frame = +3
Query: 6 IHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRSYYW 176
I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQFAWR +YW
Sbjct: 11 IYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYW 69
Query: 177 FLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 296
+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 70 YLTNEGIQYLRDFLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10
Length = 158
Score = 114 bits (285), Expect = 1e-25
Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 13/105 (12%)
Frame = +3
Query: 6 IHENLFESGVMTAKKDVRPNAIHPEV-KVKNLYVIKALQSLKSKNYVREQFAWRSYYWFL 182
I+E LF+ GVM AKKD HP++ K+ NL VIKA+QSLKS+ YV+EQFAWR +YW+L
Sbjct: 11 IYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 69
Query: 183 NNEGITYLRENLHLPAEIVPATMKAS------------RPDAPAR 281
NEGI YLR LHLP EIVPAT+K S RPDAPAR
Sbjct: 70 TNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRRGAVGRPDAPAR 114
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10
Length = 156
Score = 112 bits (280), Expect = 4e-25
Identities = 61/111 (54%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Frame = +3
Query: 6 IHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQFAWRSYYWFLN 185
I+E LF+ GV+ AKKD H E+ V NL+VI+A+QSL S+ YV+EQF WR YYW+L
Sbjct: 11 IYEYLFKEGVLVAKKDFHLPK-HGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQ 69
Query: 186 NEGITYLRENLHLPAEIVPATMK-ASRPDAPARPTVGGSPRTALTGAYRTG 335
NEGI YLR+ LHLP EIVPAT+K +RP+A G+PR A G R G
Sbjct: 70 NEGIQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGAPR-AQVGEDRAG 119
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10
Length = 166
Score = 111 bits (277), Expect = 8e-25
Identities = 59/100 (59%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Frame = +3
Query: 6 IHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRSYYW 176
I+E LF+ GVM AKKDV A HPE+ V NL+V+KA+QSLKS YV+EQFAWR +YW
Sbjct: 11 IYELLFKEGVMVAKKDVHL-AKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYW 69
Query: 177 FLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 296
+L NEGI YLR+ LHLP EIVPAT++ ARP G
Sbjct: 70 YLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARPRPKG 109
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b
Length = 160
Score = 105 bits (263), Expect = 4e-23
Identities = 65/130 (50%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Frame = +3
Query: 6 IHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFAWRSYYWFL 182
I+E LF+ GV+ AKKD HPE++ + NL+VIKA+QSL S+ V+EQFAWR YYW+L
Sbjct: 11 IYEYLFKEGVIVAKKDFHAQK-HPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYL 69
Query: 183 NNEGITYLRENLHLPAEIVPATMK--ASRPDAPARPTVGGSPRTALTGAYRTGNTANMSE 356
NEGI LR LHLP EIVP+T+K A RP VGG PR A +TG
Sbjct: 70 TNEGIEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGG-PR-GPGDASKTGE----DR 123
Query: 357 AVMKDAPGDS 386
+ + APG S
Sbjct: 124 SAYRRAPGGS 133
>sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN)
Length = 4687
Score = 103 bits (258), Expect = 1e-22
Identities = 54/101 (53%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +3
Query: 6 IHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFAWRSYYWFL 182
I+E LF GVM AKKD RP ++HP V V NL V++A+ SLK++ VRE FAW +YW+L
Sbjct: 15 IYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYL 74
Query: 183 NNEGITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 302
NEGI +LR+ LHLP EIVPA++ + RP A P SP
Sbjct: 75 TNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRRSP 115
>sp|Q9QXS1|PLEC1_MOUSE Plectin 1 (PLTN) (PCN)
Length = 964
Score = 103 bits (256), Expect = 2e-22
Identities = 54/101 (53%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = +3
Query: 6 IHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFAWRSYYWFL 182
I+E LF GVM AKKD RP ++HP V V NL V++A+ SLK++ VRE FAW +YW+L
Sbjct: 15 IYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYL 74
Query: 183 NNEGITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 302
NEGI +LR+ LHLP EIVPA++ + RP A P SP
Sbjct: 75 TNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSP 115
>sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10
Length = 183
Score = 101 bits (252), Expect = 7e-22
Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Frame = +3
Query: 3 KIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQFAWRSYYWFL 182
+I + LF+ GV+ AKKD A HP++ V NL VIK +QS KSK YVRE F+W+ YYW+L
Sbjct: 10 EICKYLFQEGVLYAKKDYNL-AKHPQIDVPNLQVIKFMQSFKSKEYVRETFSWQYYYWYL 68
Query: 183 NNEGITYLRENLHLPAEIVPATMKAS-RPDAPARPTVGGSP 302
N+GI +L L+LP+EIVPAT+K S RP P RP G P
Sbjct: 69 TNDGIEHLLNYLNLPSEIVPATLKKSARP--PGRPFGSGPP 107
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,925,241
Number of Sequences: 369166
Number of extensions: 864272
Number of successful extensions: 2817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2798
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)