Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_I09
(492 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63325|RS10_MOUSE 40S ribosomal protein S10 >gi|54039307... 120 2e-27
sp|P46783|RS10_HUMAN 40S ribosomal protein S10 120 2e-27
sp|Q07254|RS10_XENLA 40S ribosomal protein S10 120 2e-27
sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 119 3e-27
sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 116 3e-26
sp|O77302|RS10_LUMRU 40S ribosomal protein S10 114 1e-25
sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10 110 1e-24
sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN) 110 2e-24
sp|Q9QXS1|PLEC1_MOUSE Plectin 1 (PLTN) (PCN) 109 4e-24
sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b 108 5e-24
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10
sp|P63326|RS10_RAT 40S ribosomal protein S10
Length = 165
Score = 120 bits (301), Expect = 2e-27
Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVR 185
ML+P R I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVK 59
Query: 186 EQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 335
EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10
Length = 165
Score = 120 bits (301), Expect = 2e-27
Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVR 185
ML+P R I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVK 59
Query: 186 EQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 335
EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10
Length = 165
Score = 120 bits (300), Expect = 2e-27
Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVR 185
ML+P R I+E LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+
Sbjct: 1 MLMPKKDRIAIYELLFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVK 59
Query: 186 EQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 335
EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10
Length = 158
Score = 119 bits (299), Expect = 3e-27
Identities = 66/115 (57%), Positives = 78/115 (67%), Gaps = 13/115 (11%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV-KVKNLYVIKALQSLKSKNYVREQ 191
ML+P R I+E LF+ GVM AKKD HP++ K+ NL VIKA+QSLKS+ YV+EQ
Sbjct: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQ 59
Query: 192 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKAS------------RPDAPAR 320
FAWR +YW+L NEGI YLR LHLP EIVPAT+K S RPDAPAR
Sbjct: 60 FAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRRGAVGRPDAPAR 114
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10
Length = 166
Score = 116 bits (290), Expect = 3e-26
Identities = 63/110 (57%), Positives = 76/110 (69%), Gaps = 3/110 (2%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVR 185
ML+P R I+E LF+ GVM AKKDV A HPE+ V NL+V+KA+QSLKS YV+
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHL-AKHPELADKNVPNLHVMKAMQSLKSCGYVK 59
Query: 186 EQFAWRSYYWFLNNEGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 335
EQFAWR +YW+L NEGI YLR+ LHLP EIVPAT++ ARP G
Sbjct: 60 EQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARPRPKG 109
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10
Length = 156
Score = 114 bits (285), Expect = 1e-25
Identities = 64/121 (52%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQF 194
ML+ R I+E LF+ GV+ AKKD H E+ V NL+VI+A+QSL S+ YV+EQF
Sbjct: 1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPK-HGEIDVPNLHVIRAMQSLVSRGYVKEQF 59
Query: 195 AWRSYYWFLNNEGITYLRENLHLPAEIVPATMK-ASRPDAPARPTVGGSPRTALTGAYRT 371
WR YYW+L NEGI YLR+ LHLP EIVPAT+K +RP+A G+PR A G R
Sbjct: 60 CWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGAPR-AQVGEDRA 118
Query: 372 G 374
G
Sbjct: 119 G 119
>sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10
Length = 183
Score = 110 bits (276), Expect = 1e-24
Identities = 60/110 (54%), Positives = 76/110 (69%), Gaps = 1/110 (0%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQF 194
M+IP RN+I + LF+ GV+ AKKD A HP++ V NL VIK +QS KSK YVRE F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNL-AKHPQIDVPNLQVIKFMQSFKSKEYVRETF 59
Query: 195 AWRSYYWFLNNEGITYLRENLHLPAEIVPATMKAS-RPDAPARPTVGGSP 341
+W+ YYW+L N+GI +L L+LP+EIVPAT+K S RP P RP G P
Sbjct: 60 SWQYYYWYLTNDGIEHLLNYLNLPSEIVPATLKKSARP--PGRPFGSGPP 107
>sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN)
Length = 4687
Score = 110 bits (274), Expect = 2e-24
Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQ 191
ML+P D I+E LF GVM AKKD RP ++HP V V NL V++A+ SLK++ VRE
Sbjct: 5 MLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRET 64
Query: 192 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 341
FAW +YW+L NEGI +LR+ LHLP EIVPA++ + RP A P SP
Sbjct: 65 FAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRRSP 115
>sp|Q9QXS1|PLEC1_MOUSE Plectin 1 (PLTN) (PCN)
Length = 964
Score = 109 bits (272), Expect = 4e-24
Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQ 191
ML+P D I+E LF GVM AKKD RP ++HP V V NL V++A+ SLK++ VRE
Sbjct: 5 MLMPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRET 64
Query: 192 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 341
FAW +YW+L NEGI +LR+ LHLP EIVPA++ + RP A P SP
Sbjct: 65 FAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSP 115
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b
Length = 160
Score = 108 bits (271), Expect = 5e-24
Identities = 68/140 (48%), Positives = 85/140 (60%), Gaps = 3/140 (2%)
Frame = +3
Query: 15 MLIPTDIRNKIHENLFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQ 191
M +P R I+E LF+ GV+ AKKD HPE++ + NL+VIKA+QSL S+ V+EQ
Sbjct: 1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQK-HPELESIPNLHVIKAMQSLHSRGLVKEQ 59
Query: 192 FAWRSYYWFLNNEGITYLRENLHLPAEIVPATMK--ASRPDAPARPTVGGSPRTALTGAY 365
FAWR YYW+L NEGI LR LHLP EIVP+T+K A RP VGG PR A
Sbjct: 60 FAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGG-PR-GPGDAS 117
Query: 366 RTGNTANMSEAVMKDAPGDS 425
+TG + + APG S
Sbjct: 118 KTGE----DRSAYRRAPGGS 133
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,556,440
Number of Sequences: 369166
Number of extensions: 958558
Number of successful extensions: 3083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3064
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)