Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_I18
(438 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63325|RS10_MOUSE 40S ribosomal protein S10 >gi|54039307... 112 3e-25
sp|P46783|RS10_HUMAN 40S ribosomal protein S10 112 3e-25
sp|Q07254|RS10_XENLA 40S ribosomal protein S10 112 5e-25
sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 110 1e-24
sp|O77302|RS10_LUMRU 40S ribosomal protein S10 108 4e-24
sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 108 7e-24
sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b 102 4e-22
sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10 101 8e-22
sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN) 100 1e-21
sp|Q9QXS1|PLEC1_MOUSE Plectin 1 (PLTN) (PCN) 100 2e-21
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10
sp|P63326|RS10_RAT 40S ribosomal protein S10
Length = 165
Score = 112 bits (280), Expect = 3e-25
Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 3/96 (3%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNN 173
LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQFAWR +YW+L N
Sbjct: 15 LFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTN 73
Query: 174 EGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 281
EGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 74 EGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10
Length = 165
Score = 112 bits (280), Expect = 3e-25
Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 3/96 (3%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNN 173
LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQFAWR +YW+L N
Sbjct: 15 LFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTN 73
Query: 174 EGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 281
EGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 74 EGIQYLRDYLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10
Length = 165
Score = 112 bits (279), Expect = 5e-25
Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 3/96 (3%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNN 173
LF+ GVM AKKDV HPE+ V NL+V+KA+QSLKS+ YV+EQFAWR +YW+L N
Sbjct: 15 LFKEGVMVAKKDVHMPK-HPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTN 73
Query: 174 EGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 281
EGI YLR+ LHLP EIVPAT++ SRP+ RP G
Sbjct: 74 EGIQYLRDFLHLPPEIVPATLRRSRPET-GRPRPKG 108
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10
Length = 158
Score = 110 bits (276), Expect = 1e-24
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 13/101 (12%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEV-KVKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNNEG 179
LF+ GVM AKKD HP++ K+ NL VIKA+QSLKS+ YV+EQFAWR +YW+L NEG
Sbjct: 15 LFKEGVMVAKKDYHAPK-HPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEG 73
Query: 180 ITYLRENLHLPAEIVPATMKAS------------RPDAPAR 266
I YLR LHLP EIVPAT+K S RPDAPAR
Sbjct: 74 IEYLRIFLHLPPEIVPATLKRSVRAETVRRGAVGRPDAPAR 114
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10
Length = 156
Score = 108 bits (271), Expect = 4e-24
Identities = 59/107 (55%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNNEGI 182
LF+ GV+ AKKD H E+ V NL+VI+A+QSL S+ YV+EQF WR YYW+L NEGI
Sbjct: 15 LFKEGVLVAKKDFHLPK-HGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGI 73
Query: 183 TYLRENLHLPAEIVPATMK-ASRPDAPARPTVGGSPRTALTGAYRTG 320
YLR+ LHLP EIVPAT+K +RP+A G+PR A G R G
Sbjct: 74 QYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGAPR-AQVGEDRAG 119
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10
Length = 166
Score = 108 bits (269), Expect = 7e-24
Identities = 57/96 (59%), Positives = 68/96 (70%), Gaps = 3/96 (3%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEV---KVKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNN 173
LF+ GVM AKKDV A HPE+ V NL+V+KA+QSLKS YV+EQFAWR +YW+L N
Sbjct: 15 LFKEGVMVAKKDVHL-AKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTN 73
Query: 174 EGITYLRENLHLPAEIVPATMKASRPDAPARPTVGG 281
EGI YLR+ LHLP EIVPAT++ ARP G
Sbjct: 74 EGIQYLRDFLHLPPEIVPATLRRQTRPETARPRPKG 109
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b
Length = 160
Score = 102 bits (254), Expect = 4e-22
Identities = 63/126 (50%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNNEG 179
LF+ GV+ AKKD HPE++ + NL+VIKA+QSL S+ V+EQFAWR YYW+L NEG
Sbjct: 15 LFKEGVIVAKKDFHAQK-HPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYLTNEG 73
Query: 180 ITYLRENLHLPAEIVPATMK--ASRPDAPARPTVGGSPRTALTGAYRTGNTANMSEAVMK 353
I LR LHLP EIVP+T+K A RP VGG PR A +TG + +
Sbjct: 74 IEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGG-PR-GPGDASKTGE----DRSAYR 127
Query: 354 DAPGDS 371
APG S
Sbjct: 128 RAPGGS 133
>sp|Q9AYP4|RS10_ORYSA 40S ribosomal protein S10
Length = 183
Score = 101 bits (251), Expect = 8e-22
Identities = 54/96 (56%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEVKVKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNNEGI 182
LF+ GV+ AKKD A HP++ V NL VIK +QS KSK YVRE F+W+ YYW+L N+GI
Sbjct: 15 LFQEGVLYAKKDYNL-AKHPQIDVPNLQVIKFMQSFKSKEYVRETFSWQYYYWYLTNDGI 73
Query: 183 TYLRENLHLPAEIVPATMKAS-RPDAPARPTVGGSP 287
+L L+LP+EIVPAT+K S RP P RP G P
Sbjct: 74 EHLLNYLNLPSEIVPATLKKSARP--PGRPFGSGPP 107
>sp|P30427|PLEC1_RAT Plectin 1 (PLTN) (PCN)
Length = 4687
Score = 100 bits (250), Expect = 1e-21
Identities = 52/97 (53%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNNEG 179
LF GVM AKKD RP ++HP V V NL V++A+ SLK++ VRE FAW +YW+L NEG
Sbjct: 19 LFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYLTNEG 78
Query: 180 ITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 287
I +LR+ LHLP EIVPA++ + RP A P SP
Sbjct: 79 IDHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRRSP 115
>sp|Q9QXS1|PLEC1_MOUSE Plectin 1 (PLTN) (PCN)
Length = 964
Score = 100 bits (248), Expect = 2e-21
Identities = 52/97 (53%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Frame = +3
Query: 3 LFESGVMTAKKDVRPNAIHPEVK-VKNLYVIKALQSLKSKNYVREQFAWRSYYWFLNNEG 179
LF GVM AKKD RP ++HP V V NL V++A+ SLK++ VRE FAW +YW+L NEG
Sbjct: 19 LFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYLTNEG 78
Query: 180 ITYLRENLHLPAEIVPATM-KASRPDAPARPTVGGSP 287
I +LR+ LHLP EIVPA++ + RP A P SP
Sbjct: 79 IDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSP 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,957,693
Number of Sequences: 369166
Number of extensions: 820489
Number of successful extensions: 2700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2683
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)