Planaria EST Database

DrC_00244

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00244
         (2020 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P90901|IFA1_CAEEL  Intermediate filament protein ifa-1 (I...   236   2e-61
sp|Q01241|NF70_LOLPE  70 kDa neurofilament protein (NF70)         235   4e-61
sp|Q01240|NF60_LOLPE  60 kDa neurofilament protein (NF60)         235   4e-61
sp|O02365|IFA2_CAEEL  Intermediate filament protein ifa-2 (I...   224   7e-58
sp|P90900|IFA4_CAEEL  Intermediate filament protein ifa-4 (I...   223   1e-57
sp|P23731|IFEB_ASCSU  Intermediate filament protein B (IF-B)      205   3e-52
sp|Q21065|IFA3_CAEEL  Intermediate filament protein ifa-3 (I...   204   1e-51
sp|P23730|IFEA_ASCSU  Intermediate filament protein A (IF-A)      202   4e-51
sp|P31732|OV71_ONCVO  Muscle cell intermediate filament prot...   200   1e-50
sp|Q19289|IFB1_CAEEL  Intermediate filament protein ifb-1 (I...   190   1e-47

>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (Intermediate filament protein
            A1) (IF-A1) (Cel IF A1)
          Length = 575

 Score =  236 bits (601), Expect = 2e-61
 Identities = 152/512 (29%), Positives = 254/512 (49%), Gaps = 3/512 (0%)
 Frame = +1

Query: 403  SCEIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKR 582
            + +++ L+    KDT  I+ +YE E+   + L++++ K R  +E Q+  ++ EL ++R++
Sbjct: 98   AADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRK 157

Query: 583  LMLLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKL 762
            L        Q ++ ID     L N E E+  L+R       +V + K+E + L  EL++ 
Sbjct: 158  LEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRA 217

Query: 763  RQDYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMG 942
            R D ++E L  I  ++++Q L E +DF +++H+ E+KEL T+A RD T EN  ++++E+ 
Sbjct: 218  RTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELS 277

Query: 943  RALRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSM 1122
             A+RDI+ EY+   +  + +ME+ Y L++QEI+T   R N+E  + KEE  R+++Q+  +
Sbjct: 278  SAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDL 337

Query: 1123 RSRIADLEMQNAEYEHNLNMIRGNYEETQRSLELKLMSXXXXXXXXXXXXSAALTELQSL 1302
            R ++ADLE +N+  E  +  +    E+ QRS E  L               A + ELQ L
Sbjct: 338  RGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQML 397

Query: 1303 LDAKLGLELEIAAYAKLLEFEESRVNSNTEGNMIISQFXXXXXXXXXXXXXXXXXXXXXX 1482
            LD K  L+ EIA Y K+LE EE+R         ++                         
Sbjct: 398  LDTKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVVKTHAITQETDTE------------- 444

Query: 1483 XXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLTGSFIILE 1662
                                  T R      + R  F+R+ KGN+SI E    G FI+L+
Sbjct: 445  ----------------------TMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQ 482

Query: 1663 NI-GTKVESLEGMTIKRAIEGNSNQISYTISSKVTLNAGEKISLVSRGKKTGKGLE--IE 1833
            N    K E++    +KR I+G    + YT+     L AG+ + + +R +      +  + 
Sbjct: 483  NTHRAKDEAIGEWKLKRRIDGKRENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVY 541

Query: 1834 TDEASWGVGNNVVTTSYDSEGVEKAAHYQEVS 1929
              E S+G GNNV T  ++ EG E+A H Q  S
Sbjct: 542  DAEDSFGSGNNVQTILFNKEGEERATHIQRQS 573


 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 24/42 (57%), Positives = 34/42 (80%)
 Frame = +2

Query: 275 QSNVNSMRKGRAQEKRDMQDLNERFASYIEKARFLEAQNKQL 400
           Q+  +++R  R +EK++M DLN+R ASYIEK RFLEAQN++L
Sbjct: 56  QNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKL 97

>sp|Q01241|NF70_LOLPE 70 kDa neurofilament protein (NF70)
          Length = 615

 Score =  235 bits (599), Expect = 4e-61
 Identities = 133/369 (36%), Positives = 212/369 (57%), Gaps = 2/369 (0%)
 Frame = +1

Query: 277  IKCKLDEERKSPR--KERYARFE*KIRQLY*KGTIPRSSK*TISSCEIEQLKGGSVKDTS 450
            +K   + E++  R   ER+A +  K+R L         ++    + E+E+LK    K+TS
Sbjct: 89   VKANREREKQDMRDLNERFANYIEKVRFL--------EAQNKKLAGELEELKSKWGKETS 140

Query: 451  KIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLMLLEDINGQYKSTID 630
             IKE+YE E+ + R L++ + K +  L+V++  L  +L+  +K L      +   +  I 
Sbjct: 141  AIKEMYETELEEARKLIDATNKEKITLDVRVTELIDQLERQQKDLEESRTYHQIDQEQIA 200

Query: 631  KQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQDYEREALAHITVEH 810
            +Q Q+L + EGE+  LRR   +   +  ++   +  + DE++K+R D   E + H+  E+
Sbjct: 201  RQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAEN 260

Query: 811  ELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRALRDIQTEYENKLSG 990
              Q L E ++F+K +H  E+KEL  +AYRD T EN  +W++E+ +A+RDIQ EY+ K   
Sbjct: 261  RRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQ 320

Query: 991  IKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEH 1170
            ++ ++EA Y L++QE RT  T+ N+E T  KEEN+++KS +  +R+R+ADLE +NA+ E 
Sbjct: 321  MRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLER 380

Query: 1171 NLNMIRGNYEETQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAK 1350
                +  + EE  R  EL+                + L ELQ L+D KL LELEIAAY K
Sbjct: 381  TNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRK 440

Query: 1351 LLEFEESRV 1377
            LLE EESRV
Sbjct: 441  LLEGEESRV 449


 Score = 59.7 bits (143), Expect = 3e-08
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = +2

Query: 278 SNVNSMRKGRAQEKRDMQDLNERFASYIEKARFLEAQNKQL 400
           + VN ++  R +EK+DM+DLNERFA+YIEK RFLEAQNK+L
Sbjct: 84  TGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKL 124


 Score = 55.1 bits (131), Expect = 8e-07
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
 Frame = +1

Query: 1591 FRRTTKGNISIAETDLTGSFIILENIGTKVESLEGMTIKRAIEGNSNQISYTISSKVTLN 1770
            ++RT+KG++SI E D  G FI LE    K E+L G  I R ++ N    +Y I + V L 
Sbjct: 503  YQRTSKGSVSIKEADSQGCFIALET--KKEENLTGWKIVRKVDDNK-VYTYEIPNLV-LK 558

Query: 1771 AGEKISLVSRGKKT---GKGLEIETDEASWGVGNNVVTTSYDSEGVEKAAHYQ 1920
             G  + + S+  +    G  L +  +  +WG G+NVVT   + +G +KA + Q
Sbjct: 559  TGTVVKIWSKNHQAQARGDDL-VSRENDTWGTGSNVVTILQNEKGEDKANYTQ 610

>sp|Q01240|NF60_LOLPE 60 kDa neurofilament protein (NF60)
          Length = 511

 Score =  235 bits (599), Expect = 4e-61
 Identities = 133/369 (36%), Positives = 212/369 (57%), Gaps = 2/369 (0%)
 Frame = +1

Query: 277  IKCKLDEERKSPR--KERYARFE*KIRQLY*KGTIPRSSK*TISSCEIEQLKGGSVKDTS 450
            +K   + E++  R   ER+A +  K+R L         ++    + E+E+LK    K+TS
Sbjct: 89   VKANREREKQDMRDLNERFANYIEKVRFL--------EAQNKKLAGELEELKSKWGKETS 140

Query: 451  KIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLMLLEDINGQYKSTID 630
             IKE+YE E+ + R L++ + K +  L+V++  L  +L+  +K L      +   +  I 
Sbjct: 141  AIKEMYETELEEARKLIDATNKEKITLDVRVTELIDQLERQQKDLEESRTYHQIDQEQIA 200

Query: 631  KQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQDYEREALAHITVEH 810
            +Q Q+L + EGE+  LRR   +   +  ++   +  + DE++K+R D   E + H+  E+
Sbjct: 201  RQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAEN 260

Query: 811  ELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRALRDIQTEYENKLSG 990
              Q L E ++F+K +H  E+KEL  +AYRD T EN  +W++E+ +A+RDIQ EY+ K   
Sbjct: 261  RRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQ 320

Query: 991  IKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEH 1170
            ++ ++EA Y L++QE RT  T+ N+E T  KEEN+++KS +  +R+R+ADLE +NA+ E 
Sbjct: 321  MRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLER 380

Query: 1171 NLNMIRGNYEETQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAK 1350
                +  + EE  R  EL+                + L ELQ L+D KL LELEIAAY K
Sbjct: 381  TNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRK 440

Query: 1351 LLEFEESRV 1377
            LLE EESRV
Sbjct: 441  LLEGEESRV 449


 Score = 59.7 bits (143), Expect = 3e-08
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = +2

Query: 278 SNVNSMRKGRAQEKRDMQDLNERFASYIEKARFLEAQNKQL 400
           + VN ++  R +EK+DM+DLNERFA+YIEK RFLEAQNK+L
Sbjct: 84  TGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKL 124

>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (Intermediate filament protein
            A2) (IF-A2) (Cel IF A2)
          Length = 581

 Score =  224 bits (571), Expect = 7e-58
 Identities = 154/511 (30%), Positives = 250/511 (48%), Gaps = 4/511 (0%)
 Frame = +1

Query: 409  EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLM 588
            +++ L+G   K T  +K +YE+EI    N++  + K+    E +I  L+ +LD+LRK+  
Sbjct: 102  DLKMLQGRFGKSTGSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFE 161

Query: 589  LLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQ 768
              +    + +  ID     L N E E+  L+R       +V++ K+E   L  EL+++R 
Sbjct: 162  EAQRGRAEDRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRI 221

Query: 769  DYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRA 948
            + ++E L  I  +++++ + E +DF K+  ETE+KEL   A RD T EN  Y+++E+  A
Sbjct: 222  ELDQETLLRIDNQNKVKTILEEIDFMKRGFETELKELQAQAARDTTSENREYFKNELANA 281

Query: 949  LRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRS 1128
            +RDI+ EY+  ++G + +ME+ Y L++QEI T   R N E  + KEE  R+++Q   +R 
Sbjct: 282  MRDIRAEYDQIMNGNRNDMESWYQLRVQEINTQSNRQNAENNYQKEEVKRLRNQTSELRQ 341

Query: 1129 RIADLEMQNAEYEHNLNMIRGNYEETQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLD 1308
            +++DLE +N   E  +  +    E+ QRS E  L               A + ELQ LLD
Sbjct: 342  KLSDLESRNLLLEKQIEDLNYQLEDDQRSYEAALNDKDAQIRKLREECQALMVELQMLLD 401

Query: 1309 AKLGLELEIAAYAKLLEFEESRVNSNTEGNMIISQFXXXXXXXXXXXXXXXXXXXXXXXX 1488
             K  L+ E+  Y ++LE        N+EGN +                            
Sbjct: 402  TKQTLDGELKVYRQMLE-------GNSEGNGL---------------------------- 426

Query: 1489 XXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLTGSFIILENI 1668
                                T R      S R  ++R+ KGN++I ET   G F+ILEN 
Sbjct: 427  RQLVEKVVRTSAINEEADTETMRVVKGEHSSRTSYQRSAKGNVAIKETSPEGKFVILENT 486

Query: 1669 -GTKVESLEGMTIKRAIEGNSNQISYTISSKVTLNAGEKISLVSRGKKTGKGLEI---ET 1836
               K E L    +KR I+G   +I +T  S   L+  + + + +RG+      E+   E 
Sbjct: 487  HRAKEEPLGDWKLKRKIDG-KREIVFTFPSDYILHPFQSVKIFARGQGIANPPEVLIFEG 545

Query: 1837 DEASWGVGNNVVTTSYDSEGVEKAAHYQEVS 1929
            DE ++GVG NV T  Y+++G E+A H Q  S
Sbjct: 546  DE-TFGVGANVQTILYNNKGEERATHIQRQS 575


 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 21/42 (50%), Positives = 34/42 (80%)
 Frame = +2

Query: 275 QSNVNSMRKGRAQEKRDMQDLNERFASYIEKARFLEAQNKQL 400
           Q+  +++R  R +EK+++ +LN+R ASYIEK RFL+AQN++L
Sbjct: 58  QNAASTIRDNREREKKEIMELNDRLASYIEKVRFLDAQNRKL 99

>sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (Intermediate filament protein
            A4) (IF-A4) (Cel IF A4)
          Length = 575

 Score =  223 bits (569), Expect = 1e-57
 Identities = 149/513 (29%), Positives = 252/513 (49%), Gaps = 6/513 (1%)
 Frame = +1

Query: 409  EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLM 588
            ++  L+G    D++ +K +YE E+R  ++L+ DS+K RA LE QI  L  EL++ R +L 
Sbjct: 101  DLNLLRGKWGHDSTSVKVMYETELRSAKDLIADSDKERAQLEDQIKKLVEELNNYRNKLH 160

Query: 589  LLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQ 768
              E      +  +D     LG  E E+  L+R  +     +   K E   + D L   R 
Sbjct: 161  EAERGADVTRKELDNVLGRLGALEAEIELLKRRISLMEESIGHLKRENHRMIDSLHHARN 220

Query: 769  DYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRA 948
              E+E L  I  ++++Q L E  DF ++IH++E+ +L  +A RD T EN  Y+++E+  A
Sbjct: 221  AVEQETLNRIDYQNQVQTLLEECDFIRRIHDSEIHDLLAMASRDTTVENREYFKNELSSA 280

Query: 949  LRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRS 1128
            +R+I++EY++  +  + ++E+ Y L++QEI T  +R+ +E  + +EE  R+++ +  MR 
Sbjct: 281  IREIRSEYDHVSNTTRTDIESWYKLKVQEIHTQNSRNCLEQNYAREEVKRLRTTLGDMRG 340

Query: 1129 RIADLEMQNAEYEHNLNMIRGNYEETQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLD 1308
            ++ADLE +N   E  +  +    EE  RS E  L                 + ELQ L+D
Sbjct: 341  KMADLEGRNLLLEKQIEDLNYQMEEDMRSYEQSLNDKDTSINKLRDESKILMVELQMLID 400

Query: 1309 AKLGLELEIAAYAKLLEFEESRVNSNTEGNMIISQFXXXXXXXXXXXXXXXXXXXXXXXX 1488
             K  L+ EI  Y K+L+ EE+R         ++                           
Sbjct: 401  TKQTLDAEIVIYRKMLDGEENRAGLRQLVEQVVK-------------------------- 434

Query: 1489 XXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLTGSFIILENI 1668
                               + + ETT + S    + R+ KGNI+I E + +G +I+LENI
Sbjct: 435  -----TTSIHQTKEIESLRVLKGETTSHSS----YSRSAKGNIAIQEAEPSGKYIVLENI 485

Query: 1669 GTKVESLEGMTIKRAIEGNSNQISYTISSKVTLNAGEKISLVSRGKKTGKGLEIETD--- 1839
              + E++    ++R I G   +I +T   + TL A + + + +R    G+G+    D   
Sbjct: 486  SRRDENIGDWKLRRKIAG-KREIVFTFpreFTLRAQKSVKIFAR----GQGVHSPPDSLV 540

Query: 1840 ---EASWGVGNNVVTTSYDSEGVEKAAHYQEVS 1929
               E S+G GN+VVTT Y+ EG ++A+H Q  S
Sbjct: 541  YDLEDSFGTGNDVVTTLYNKEGEDRASHSQRAS 573


 Score = 51.6 bits (122), Expect = 8e-06
 Identities = 21/38 (55%), Positives = 33/38 (86%)
 Frame = +2

Query: 287 NSMRKGRAQEKRDMQDLNERFASYIEKARFLEAQNKQL 400
           +++R+ R +EK++M +LN+R ASYIEK RFLEAQN+++
Sbjct: 61  SAIRESRTREKKEMSELNDRLASYIEKVRFLEAQNRKM 98


 Score = 36.2 bits (82), Expect = 0.37
 Identities = 25/80 (31%), Positives = 40/80 (50%)
 Frame = +1

Query: 985  SGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEY 1164
            S +   M    G     IR S+TR+  E +   E N R+ S I+ +R     LE QN + 
Sbjct: 46   SNLTSGMSPFGGHAASAIRESRTREKKEMS---ELNDRLASYIEKVRF----LEAQNRKM 98

Query: 1165 EHNLNMIRGNYEETQRSLEL 1224
            E +LN++RG +     S+++
Sbjct: 99   EKDLNLLRGKWGHDSTSVKV 118

>sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B)
          Length = 589

 Score =  205 bits (522), Expect = 3e-52
 Identities = 141/509 (27%), Positives = 244/509 (47%), Gaps = 4/509 (0%)
 Frame = +1

Query: 409  EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLM 588
            ++++L+G   KDTS+IK  Y   +R  R  ++D  + +A ++V++  L  +L +LR R  
Sbjct: 112  DLDELRGRWGKDTSEIKIQYSDSLRDARKEIDDGARRKAEIDVKVARLRDDLAELRNRYE 171

Query: 589  LLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQ 768
             ++      +  I++ +  + + + EL  LR        +  +   +   + +EL+K R 
Sbjct: 172  DVQHRRESDREKINQWQHAIEDAQSELEMLRARWRQLTEEEKRLNGDNARIWEELQKARN 231

Query: 769  DYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRA 948
            D + E L  I  ++++Q L E ++F +++HE EVKEL  +  + P  +   ++++E+  A
Sbjct: 232  DLDEETLGRIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPA-DTREFFKNELALA 290

Query: 949  LRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRS 1128
            +RDI+ EY+      KQ+ME+ Y L++ E++ S  R N+E+++ +EE  R++  I  +R 
Sbjct: 291  IRDIKDEYDYIAKQGKQDMESWYKLKVSEVQGSANRANMESSYQREEVKRMRDNIGDLRG 350

Query: 1129 RIADLEMQNAEYEHNLNMIRGNYEETQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLD 1308
            ++ DLE +NA  E  +  +     + QR  E  L                 + ELQ+LLD
Sbjct: 351  KLGDLEAKNALLEKEVQNLNYQLNDDQRQYEAALNDRDATLRRMREECQTLVAELQALLD 410

Query: 1309 AKLGLELEIAAYAKLLEFEESRVNSNTEGNMIISQFXXXXXXXXXXXXXXXXXXXXXXXX 1488
             K  L+ EIA Y K+LE EESRV        ++                           
Sbjct: 411  TKQMLDAEIAIYRKMLEGEESRVGLRQMVEQVVKTHSLQQQEDTD--------------- 455

Query: 1489 XXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLTGSFIILENI 1668
                                + R      S +  F+R+ KGN++I+E D  G FI LEN 
Sbjct: 456  --------------------STRNVRGEVSTKTTFQRSAKGNVTISECDPNGKFITLENT 495

Query: 1669 -GTKVESLEGMTIKRAIEGNSNQISYTISSKVTLNAGEKISLVSR---GKKTGKGLEIET 1836
              +K E+L    +KR ++ N  +I YTI     L AG  + + +R   G        +  
Sbjct: 496  HRSKDENLGEHRLKRKLD-NRREIVYTIPPNTVLKAGRTMKIYARDQGGIHNPPDTLVFD 554

Query: 1837 DEASWGVGNNVVTTSYDSEGVEKAAHYQE 1923
             E +WG+G NVVT+  + +G E+A H Q+
Sbjct: 555  GENTWGIGANVVTSLINKDGDERATHTQK 583


 Score = 45.4 bits (106), Expect = 6e-04
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
 Frame = +2

Query: 140 YKPISQPRNNLRDLQKTAGISLNAQMSDQQGGSMVPLIR--------GDSVALQSNV-NS 292
           Y+   QPR  +R   + +G      +S   GG ++ ++         G S AL +N   S
Sbjct: 15  YRSTIQPRTAVRTQSRQSGAYSTGAVSGG-GGRVLKMVTEMGSASIGGISPALSANAAKS 73

Query: 293 MRKGRAQEKRDMQDLNERFASYIEKARFLEAQNKQLV 403
             +   +EK++MQ LN+R  +YI++ + LE QN++LV
Sbjct: 74  FLEATDKEKKEMQGLNDRLGNYIDRVKKLEEQNRKLV 110

>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (Intermediate filament protein
            A3) (IF-A3) (Cel IF A3)
          Length = 581

 Score =  204 bits (518), Expect = 1e-51
 Identities = 143/500 (28%), Positives = 236/500 (47%), Gaps = 3/500 (0%)
 Frame = +1

Query: 439  KDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLMLLEDINGQYK 618
            K T  +K +YE+EI    N++ ++ K+    E +I  ++ +LD+LRK+    +    + +
Sbjct: 112  KSTGSVKIMYEMEITTATNVVKETGKDHEEAEKEIGKIKDQLDELRKKFEEAQKGRAEDR 171

Query: 619  STIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQDYEREALAHI 798
              ID+    L N E E+  L+R       +V++ K+E   L  EL+++R + ++E L  I
Sbjct: 172  LKIDELLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRSELDQETLLRI 231

Query: 799  TVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRALRDIQTEYEN 978
              ++++  + E +DF K+  ETE+K+L   A RD T EN  Y+++E+  ++RDI+ EY+ 
Sbjct: 232  DNQNKVTTILEEIDFMKRGFETELKDLQAQAARDTTSENREYFKNELMNSIRDIRAEYDR 291

Query: 979  KLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNA 1158
             ++G + ++E+   +++QEI T   R N E  H ++E  R+ SQ+  ++S+ A+L  +N 
Sbjct: 292  FMAGNRNDLESWSQIRVQEINTQTNRQNAEINHKRDEVKRLHSQVSELKSKHAELAARNG 351

Query: 1159 EYEHNLNMIRGNYEETQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIA 1338
              E  L  +    E+ QRS E  L               A L ELQ LLD K  L+ E+ 
Sbjct: 352  LLEKQLEDLNYQLEDDQRSYEAALNDKDAQVRKLREECQALLVELQMLLDTKQTLDGELK 411

Query: 1339 AYAKLLEFEESRVNSNTEGNMIISQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1518
             Y ++LE        N+E N +                                      
Sbjct: 412  VYRRMLE-------GNSEENGL----------------------------RQLVEKVVRT 436

Query: 1519 XXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLTGSFIILENI-GTKVESLEG 1695
                      T R      S R  ++R+ KGN+SI E    G F+ILEN    K E L  
Sbjct: 437  SAINEEVDTETMRVVKGEHSSRTSYQRSAKGNVSIKEVSPEGKFVILENTHRDKEEPLGD 496

Query: 1696 MTIKRAIEGNSNQISYTISSKVTLNAGEKISLVSRGKKTGKGLEIETDEA--SWGVGNNV 1869
              +KR I+G   +I +T  S   L+  + + + +RG       E+   E   ++G G NV
Sbjct: 497  WKLKRKIDG-KREIVFTFPSDYILHPVQTVKIFARGNGVANPPEVLVFEGDDTFGAGANV 555

Query: 1870 VTTSYDSEGVEKAAHYQEVS 1929
             T  Y++ G E+A H Q  S
Sbjct: 556  QTILYNNSGEERATHMQRQS 575


 Score = 45.1 bits (105), Expect = 8e-04
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +2

Query: 275 QSNVNSMRKGRAQEKRDMQDLNERFASYIEKARFLEAQNKQL 400
           Q   +++R  R +EK+++ +LN+R ASYI K RFL AQN++L
Sbjct: 58  QGAASTIRDDREREKKEITELNDRLASYIGKVRFLAAQNRKL 99

>sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A)
          Length = 497

 Score =  202 bits (513), Expect = 4e-51
 Identities = 151/520 (29%), Positives = 255/520 (49%), Gaps = 11/520 (2%)
 Frame = +1

Query: 403  SCEIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKR 582
            + +++ L+G   KDT  ++ +YE E+++ R L+ND+ + R  LE +I  L  EL + R++
Sbjct: 26   AADLDLLRGRWGKDTLSVRAMYEGELQEARKLVNDTNRQREELEKEIRKLLDELSEYRRK 85

Query: 583  LMLLEDINGQY--KSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELK 756
                + + G    +  ID+   +L   E E+  LRR       ++++ K+E     +EL 
Sbjct: 86   YE--DALRGHQIDRDRIDELLNQLSGLEAEINLLRRRIANIIEEIARIKKENLQFANELT 143

Query: 757  KLRQDYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSE 936
            K R D ++E L  I  ++++Q L E +DF +++H+ E+ EL  +A RD T EN  Y+++E
Sbjct: 144  KARSDLDQETLNRIDFQNQVQTLLEEIDFMRRVHDQEIAELQAMASRDTTPENREYFKNE 203

Query: 937  MGRALRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQ 1116
            +  A+RDI+ EY+   +  + +ME+ Y L++QEI+T  TR N+E  + K+   R++ Q+ 
Sbjct: 204  LASAIRDIRAEYDQICNVNRMDMESWYKLKVQEIQTQSTRQNLEQNYAKK---RLRVQLT 260

Query: 1117 SMRSRIADLEMQNAEYEHNLNMIRGNY--EETQRSLELKLMSXXXXXXXXXXXXSAALTE 1290
             +R ++ADLE +N+  +    +   NY  E+ QRS E  L               A    
Sbjct: 261  DLRGKLADLEGRNSLLKQTQEL---NYQLEDDQRSYEAALNDRDAQIRKMDEECQA---- 313

Query: 1291 LQSLLDAKLGLELEIAAYAKLLEFEESRVNSNTEGNMIISQFXXXXXXXXXXXXXXXXXX 1470
            L  LLD K  L+ EIA Y K+LE EE+R         ++                     
Sbjct: 314  LMMLLDTKQTLDAEIAIYRKMLEGEENRAGLRQLVEQVVK-------------------- 353

Query: 1471 XXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDLTGSF 1650
                                     + + ET    S    F+R+ KGN+SI ET   G +
Sbjct: 354  -----------THGLTQVDETESLRVLKGETASRTS----FQRSAKGNVSIQETAPDGRY 398

Query: 1651 IILENI-GTKVESLEGMTIKRAIEGNSNQISYTISSKVTLNAGEKISLVSRGKKTGKGLE 1827
            ++LEN   +K E++    +KR I+G   +I YT+     L  G+ + + +RG+    G+ 
Sbjct: 399  VVLENTHRSKEEAIGEWKLKRKIDG-KREIVYTLPRDFILRPGKSVKIWARGQ---GGIH 454

Query: 1828 IETD------EASWGVGNNVVTTSYDSEGVEKAAHYQEVS 1929
               +      E ++G G+NV T  ++ EG E+A H Q  S
Sbjct: 455  SPPEQLVFDLEDTFGSGSNVQTILFNREGEERATHIQRSS 494


 Score = 42.7 bits (99), Expect = 0.004
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +2

Query: 326 MQDLNERFASYIEKARFLEAQNKQL 400
           M DLN+R ASYIEK RFLEAQN++L
Sbjct: 1   MSDLNDRLASYIEKVRFLEAQNRKL 25

>sp|P31732|OV71_ONCVO Muscle cell intermediate filament protein OV71
          Length = 432

 Score =  200 bits (509), Expect = 1e-50
 Identities = 139/460 (30%), Positives = 224/460 (48%), Gaps = 3/460 (0%)
 Frame = +1

Query: 559  ELDDLRKRLMLLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKS 738
            EL++ +KR       +   +  ID    +L N E E+  LRR  +    +VS+ K++   
Sbjct: 5    ELEEYKKRYDEALKAHQADREVIDDLLVKLSNLEAEINLLRRRVSNLEEEVSRIKKDNLY 64

Query: 739  LRDELKKLRQDYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENM 918
              +EL K R + ++E L  I  ++++Q L E +DF +++H+ E+ EL  +A RD T EN 
Sbjct: 65   FVNELNKARANLDQETLNRIDFQNQVQTLLEEIDFMRRVHDQEISELQAMAARDTTSENR 124

Query: 919  MYWQSEMGRALRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSR 1098
             Y+++E+  A+RDI+ EY+   +  + +ME+ Y L++QEI+T  TR N+E  + KEE  R
Sbjct: 125  EYFKNELSSAIRDIRAEYDQICNMNRTDMESWYKLKVQEIQTQSTRQNLEQGYAKEEVKR 184

Query: 1099 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEETQRSLELKLMSXXXXXXXXXXXXSA 1278
            ++ Q+  +R ++ADLE +N+  E  +  +    E+ QRS E  L               A
Sbjct: 185  LRVQLSDLRGKLADLEGRNSLLEKQMQELNYQLEDDQRSYEAALNDRDAQIRKMREECQA 244

Query: 1279 ALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNSNTEGNMIISQFXXXXXXXXXXXXXX 1458
             + ELQ LLD K  L+ EIA Y K+LE EE+R         ++                 
Sbjct: 245  LMMELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLRQLVEQVVK---------------- 288

Query: 1459 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERETTDYQSKRMKFRRTTKGNISIAETDL 1638
                                         + + ET    S    F+R+ KGN+SI +   
Sbjct: 289  ---------------THGLSEIGETESIRVLKGETASRTS----FQRSAKGNVSIQDASS 329

Query: 1639 TGSFIILENI-GTKVESLEGMTIKRAIEGNSNQISYTISSKVTLNAGEKISLVSRGKKTG 1815
             G FI+LEN   +K E +    +KR I+G   +I YT      L  G+ + + +RG+   
Sbjct: 330  DGKFILLENTHRSKEEPIGEWRLKRKIDG-KREIVYTFPRDFILKPGKTVKIWARGQGVY 388

Query: 1816 KGLE--IETDEASWGVGNNVVTTSYDSEGVEKAAHYQEVS 1929
               +  +   E S+GVG+NV T  ++ EG E+A+H Q  S
Sbjct: 389  SPPDQLVFDAEDSFGVGSNVQTILFNKEGEERASHIQRSS 428

>sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (Intermediate filament protein
            B1) (IF-B1) (Cel IF B1)
          Length = 589

 Score =  190 bits (483), Expect = 1e-47
 Identities = 136/517 (26%), Positives = 249/517 (48%), Gaps = 12/517 (2%)
 Frame = +1

Query: 409  EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLM 588
            ++++L+G   KDTS+IK  Y   +   R  ++D+ + +A ++V++     +L + R R  
Sbjct: 112  DLDELRGKWGKDTSEIKIKYSESLSTARKDIDDAARRKAEVDVKVARHRDDLAEYRSRYE 171

Query: 589  LLEDINGQYKSTIDKQRQELGNFEGELVELR-RFKNTRNADVSKEKEEVKSLRDELKKLR 765
             ++      +  I +    + + + E+  LR RFK   + +  +   +   + +EL+K R
Sbjct: 172  DIQQRRESDREKISQWTNAIADAQSEVEMLRARFKQLTDEE-KRVTADNSRIWEELQKAR 230

Query: 766  QDYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGR 945
             D + E +  I  ++++Q L E ++F +++HE EVKEL  +  + P  +   ++++E+  
Sbjct: 231  SDLDDETIGRIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPA-DTREFFKNELAL 289

Query: 946  ALRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMR 1125
            A+RDI+ EY+      KQ+ME+ Y L++ E++ S  R N+E+T+ ++E  R++  I  +R
Sbjct: 290  AIRDIKDEYDIIAKQGKQDMESWYKLKVSEVQGSANRANMESTYQRDEVKRMRDNIGDLR 349

Query: 1126 SRIADLEMQNAEYEHNLNMIRGNYEETQRSLELKLMSXXXXXXXXXXXXSAALTELQSLL 1305
             ++ DLE +N+  E  +  +     + QR  E  L                 + ELQ+LL
Sbjct: 350  GKLGDLENKNSLLEKEVQNLNYQLTDDQRQYEAALNDRDATLRRMREECQTLVAELQALL 409

Query: 1306 DAKLGLELEIAAYAKLLEFEESRVNSNTEGNMIISQFXXXXXXXXXXXXXXXXXXXXXXX 1485
            D K  L+ EIA Y K+LE EE+RV         +                          
Sbjct: 410  DTKQMLDAEIAIYRKMLEGEETRVGLTQMVEQAVK------------------------- 444

Query: 1486 XXXXXXXXXXXXXXXXXXXXMTERETTDYQ-------SKRMKFRRTTKGNISIAETDLTG 1644
                                + ++E TD         S +  F+R+ KGN++I+E D  G
Sbjct: 445  -----------------THSLQQQENTDSTRSVRGEVSTKTTFQRSAKGNVTISECDPNG 487

Query: 1645 SFIILENI-GTKVESLEGMTIKRAIEGNSNQISYTISSKVTLNAGEKISLVSR---GKKT 1812
             FI LEN    K E++    I+R ++G   +I Y+I + V +  G+ +++ +R   G   
Sbjct: 488  KFIKLENSHRNKDENVGEHKIRRKLDGR-REIVYSIPANVVIKPGKNLTIYARDQGGINN 546

Query: 1813 GKGLEIETDEASWGVGNNVVTTSYDSEGVEKAAHYQE 1923
                 +   E +WG+G NVVT+  + +G E+A H Q+
Sbjct: 547  PPESLVFDGENTWGIGANVVTSLVNKDGEERATHTQK 583


 Score = 45.4 bits (106), Expect = 6e-04
 Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
 Frame = +2

Query: 140 YKPISQPRNNLRDLQKTAGISLNAQMSDQQGGSMVPLIR--------GDSVALQSNV-NS 292
           Y+   QPR  +R   + +G  ++       GG ++ ++         G S AL +N   S
Sbjct: 14  YRSTIQPRTAVRSQSRQSGNYVSGGNGAGSGGRVLKMVTEMGSATVGGISPALSANAAKS 73

Query: 293 MRKGRAQEKRDMQDLNERFASYIEKARFLEAQNKQLV 403
             +   +EK+ +Q LN+R  +YI++ + LE QN++LV
Sbjct: 74  FLEATDKEKKTLQGLNDRLGNYIDRVKKLEEQNRKLV 110

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,173,584
Number of Sequences: 369166
Number of extensions: 2894338
Number of successful extensions: 13119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12279
length of database: 68,354,980
effective HSP length: 117
effective length of database: 46,740,985
effective search space used: 25941246675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00244

  1. Dr_sW_006_O16
  2. Dr_sW_004_E03
  3. Dr_sW_003_O01
  4. Dr_sW_014_L23
  5. Dr_sW_002_A01
  6. Dr_sW_014_H24
  7. Dr_sW_016_G02
  8. Dr_sW_022_B01