Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_L23
(622 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01241|NF70_LOLPE 70 kDa neurofilament protein (NF70) 96 1e-19
sp|Q01240|NF60_LOLPE 60 kDa neurofilament protein (NF60) 96 1e-19
sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (I... 80 3e-15
sp|P31732|OV71_ONCVO Muscle cell intermediate filament prot... 80 4e-15
sp|Q17107|AV71_ACAVI Muscle cell intermediate filament prot... 79 9e-15
sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B) 71 2e-12
sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (I... 70 4e-12
sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (I... 69 1e-11
sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (I... 67 5e-11
sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (I... 66 6e-11
>sp|Q01241|NF70_LOLPE 70 kDa neurofilament protein (NF70)
Length = 615
Score = 95.5 bits (236), Expect = 1e-19
Identities = 53/118 (44%), Positives = 71/118 (60%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++QE RT T+ N+E T KEEN+++KS + +R+R+ADLE +NA+ E + + EE
Sbjct: 332 KVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEE 391
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 356
R EL+ + L ELQ L+D KL LELEIAAY KLLE EESRV
Sbjct: 392 KDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRV 449
>sp|Q01240|NF60_LOLPE 60 kDa neurofilament protein (NF60)
Length = 511
Score = 95.5 bits (236), Expect = 1e-19
Identities = 53/118 (44%), Positives = 71/118 (60%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++QE RT T+ N+E T KEEN+++KS + +R+R+ADLE +NA+ E + + EE
Sbjct: 332 KVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEE 391
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 356
R EL+ + L ELQ L+D KL LELEIAAY KLLE EESRV
Sbjct: 392 KDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRV 449
>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (Intermediate filament protein
A1) (IF-A1) (Cel IF A1)
Length = 575
Score = 80.5 bits (197), Expect = 3e-15
Identities = 44/117 (37%), Positives = 65/117 (55%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++QEI+T R N+E + KEE R+++Q+ +R ++ADLE +N+ E + + E+
Sbjct: 305 KVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLED 364
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLEFEESR 353
QRS E L A + ELQ LLD K L+ EIA Y K+LE EE+R
Sbjct: 365 DQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENR 421
>sp|P31732|OV71_ONCVO Muscle cell intermediate filament protein OV71
Length = 432
Score = 80.1 bits (196), Expect = 4e-15
Identities = 45/117 (38%), Positives = 65/117 (55%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++QEI+T TR N+E + KEE R++ Q+ +R ++ADLE +N+ E + + E+
Sbjct: 160 KVQEIQTQSTRQNLEQGYAKEEVKRLRVQLSDLRGKLADLEGRNSLLEKQMQELNYQLED 219
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLEFEESR 353
QRS E L A + ELQ LLD K L+ EIA Y K+LE EE+R
Sbjct: 220 DQRSYEAALNDRDAQIRKMREECQALMMELQMLLDTKQTLDAEIAIYRKMLEGEENR 276
>sp|Q17107|AV71_ACAVI Muscle cell intermediate filament protein AV71
Length = 394
Score = 79.0 bits (193), Expect = 9e-15
Identities = 45/117 (38%), Positives = 64/117 (54%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++QEI+T TR N+E + KEE R++ Q+ +R ++ADLE +N+ E + E+
Sbjct: 122 KVQEIQTQSTRQNLEQGYAKEEVKRLRVQLSELRGKLADLEGRNSLLEKQTQELNYQLED 181
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLEFEESR 353
QRS E L A + ELQ LLD K L+ EIA Y K+LE EE+R
Sbjct: 182 DQRSYEAALNDRDAQIRKMREECQALMMELQMLLDTKQTLDAEIAIYRKMLEGEENR 238
>sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B)
Length = 589
Score = 71.2 bits (173), Expect = 2e-12
Identities = 40/118 (33%), Positives = 62/118 (52%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++ E++ S R N+E+++ +EE R++ I +R ++ DLE +NA E + + +
Sbjct: 316 KVSEVQGSANRANMESSYQREEVKRMRDNIGDLRGKLGDLEAKNALLEKEVQNLNYQLND 375
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 356
QR E L + ELQ+LLD K L+ EIA Y K+LE EESRV
Sbjct: 376 DQRQYEAALNDRDATLRRMREECQTLVAELQALLDTKQMLDAEIAIYRKMLEGEESRV 433
>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (Intermediate filament protein
A2) (IF-A2) (Cel IF A2)
Length = 581
Score = 70.1 bits (170), Expect = 4e-12
Identities = 41/125 (32%), Positives = 61/125 (48%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++QEI T R N E + KEE R+++Q +R +++DLE +N E + + E+
Sbjct: 307 RVQEINTQSNRQNAENNYQKEEVKRLRNQTSELRQKLSDLESRNLLLEKQIEDLNYQLED 366
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNS 362
QRS E L A + ELQ LLD K L+ E+ Y ++LE
Sbjct: 367 DQRSYEAALNDKDAQIRKLREECQALMVELQMLLDTKQTLDGELKVYRQMLE-------G 419
Query: 363 NTEGN 377
N+EGN
Sbjct: 420 NSEGN 424
>sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (Intermediate filament protein
B1) (IF-B1) (Cel IF B1)
Length = 589
Score = 68.6 bits (166), Expect = 1e-11
Identities = 38/118 (32%), Positives = 62/118 (52%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++ E++ S R N+E+T+ ++E R++ I +R ++ DLE +N+ E + + +
Sbjct: 316 KVSEVQGSANRANMESTYQRDEVKRMRDNIGDLRGKLGDLENKNSLLEKEVQNLNYQLTD 375
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLEFEESRV 356
QR E L + ELQ+LLD K L+ EIA Y K+LE EE+RV
Sbjct: 376 DQRQYEAALNDRDATLRRMREECQTLVAELQALLDTKQMLDAEIAIYRKMLEGEETRV 433
>sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (Intermediate filament protein
A4) (IF-A4) (Cel IF A4)
Length = 575
Score = 66.6 bits (161), Expect = 5e-11
Identities = 38/117 (32%), Positives = 60/117 (51%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++QEI T +R+ +E + +EE R+++ + MR ++ADLE +N E + + EE
Sbjct: 306 KVQEIHTQNSRNCLEQNYAREEVKRLRTTLGDMRGKMADLEGRNLLLEKQIEDLNYQMEE 365
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLEFEESR 353
RS E L + ELQ L+D K L+ EI Y K+L+ EE+R
Sbjct: 366 DMRSYEQSLNDKDTSINKLRDESKILMVELQMLIDTKQTLDAEIVIYRKMLDGEENR 422
Score = 35.4 bits (80), Expect = 0.12
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +3
Query: 15 IRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEETQRS 194
IR S+TR+ E + E N R+ S I+ +R LE QN + E +LN++RG + S
Sbjct: 63 IRESRTREKKEMS---ELNDRLASYIEKVRF----LEAQNRKMEKDLNLLRGKWGHDSTS 115
Query: 195 LEL 203
+++
Sbjct: 116 VKV 118
>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (Intermediate filament protein
A3) (IF-A3) (Cel IF A3)
Length = 581
Score = 66.2 bits (160), Expect = 6e-11
Identities = 38/112 (33%), Positives = 55/112 (49%)
Frame = +3
Query: 3 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 182
++QEI T R N E H ++E R+ SQ+ ++S+ A+L +N E L + E+
Sbjct: 307 RVQEINTQTNRQNAEINHKRDEVKRLHSQVSELKSKHAELAARNGLLEKQLEDLNYQLED 366
Query: 183 TQRSLELKLMSXXXXXXXXXXXXSAALTELQSLLDAKLGLELEIAAYAKLLE 338
QRS E L A L ELQ LLD K L+ E+ Y ++LE
Sbjct: 367 DQRSYEAALNDKDAQVRKLREECQALLVELQMLLDTKQTLDGELKVYRRMLE 418
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,395,356
Number of Sequences: 369166
Number of extensions: 440715
Number of successful extensions: 1782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)