Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E03
(885 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01241|NF70_LOLPE 70 kDa neurofilament protein (NF70) 196 6e-50
sp|Q01240|NF60_LOLPE 60 kDa neurofilament protein (NF60) 196 6e-50
sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (I... 167 3e-41
sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (I... 162 1e-39
sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (I... 153 5e-37
sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A) 152 2e-36
sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (I... 148 2e-35
sp|P31732|OV71_ONCVO Muscle cell intermediate filament prot... 137 3e-32
sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B) 135 2e-31
sp|Q17107|AV71_ACAVI Muscle cell intermediate filament prot... 129 8e-30
>sp|Q01241|NF70_LOLPE 70 kDa neurofilament protein (NF70)
Length = 615
Score = 196 bits (499), Expect = 6e-50
Identities = 99/273 (36%), Positives = 166/273 (60%)
Frame = +1
Query: 52 EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLM 231
E+E+LK K+TS IKE+YE E+ + R L++ + K + L+V++ L +L+ +K L
Sbjct: 127 ELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTELIDQLERQQKDLE 186
Query: 232 LLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQ 411
+ + I +Q Q+L + EGE+ LRR + + ++ + + DE++K+R
Sbjct: 187 ESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRM 246
Query: 412 DYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRA 591
D E + H+ E+ Q L E ++F+K +H E+KEL +AYRD T EN +W++E+ +A
Sbjct: 247 DLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQA 306
Query: 592 LRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRS 771
+RDIQ EY+ K ++ ++EA Y L++QE RT T+ N+E T KEEN+++KS + +R+
Sbjct: 307 IRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRN 366
Query: 772 RIADLEMQNAEYEHNLNMIRGNYEETQRSLELK 870
R+ADLE +NA+ E + + EE R EL+
Sbjct: 367 RLADLEARNAQLERTNQDLLRDLEEKDRQNELE 399
>sp|Q01240|NF60_LOLPE 60 kDa neurofilament protein (NF60)
Length = 511
Score = 196 bits (499), Expect = 6e-50
Identities = 99/273 (36%), Positives = 166/273 (60%)
Frame = +1
Query: 52 EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLM 231
E+E+LK K+TS IKE+YE E+ + R L++ + K + L+V++ L +L+ +K L
Sbjct: 127 ELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTELIDQLERQQKDLE 186
Query: 232 LLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQ 411
+ + I +Q Q+L + EGE+ LRR + + ++ + + DE++K+R
Sbjct: 187 ESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRM 246
Query: 412 DYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRA 591
D E + H+ E+ Q L E ++F+K +H E+KEL +AYRD T EN +W++E+ +A
Sbjct: 247 DLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQA 306
Query: 592 LRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRS 771
+RDIQ EY+ K ++ ++EA Y L++QE RT T+ N+E T KEEN+++KS + +R+
Sbjct: 307 IRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRN 366
Query: 772 RIADLEMQNAEYEHNLNMIRGNYEETQRSLELK 870
R+ADLE +NA+ E + + EE R EL+
Sbjct: 367 RLADLEARNAQLERTNQDLLRDLEEKDRQNELE 399
>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (Intermediate filament protein
A1) (IF-A1) (Cel IF A1)
Length = 575
Score = 167 bits (424), Expect = 3e-41
Identities = 90/276 (32%), Positives = 163/276 (59%)
Frame = +1
Query: 46 SCEIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKR 225
+ +++ L+ KDT I+ +YE E+ + L++++ K R +E Q+ ++ EL ++R++
Sbjct: 98 AADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRK 157
Query: 226 LMLLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKL 405
L Q ++ ID L N E E+ L+R +V + K+E + L EL++
Sbjct: 158 LEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRA 217
Query: 406 RQDYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMG 585
R D ++E L I ++++Q L E +DF +++H+ E+KEL T+A RD T EN ++++E+
Sbjct: 218 RTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELS 277
Query: 586 RALRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSM 765
A+RDI+ EY+ + + +ME+ Y L++QEI+T R N+E + KEE R+++Q+ +
Sbjct: 278 SAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDL 337
Query: 766 RSRIADLEMQNAEYEHNLNMIRGNYEETQRSLELKL 873
R ++ADLE +N+ E + + E+ QRS E L
Sbjct: 338 RGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAAL 373
>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (Intermediate filament protein
A2) (IF-A2) (Cel IF A2)
Length = 581
Score = 162 bits (410), Expect = 1e-39
Identities = 90/274 (32%), Positives = 156/274 (56%)
Frame = +1
Query: 52 EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLM 231
+++ L+G K T +K +YE+EI N++ + K+ E +I L+ +LD+LRK+
Sbjct: 102 DLKMLQGRFGKSTGSVKVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFE 161
Query: 232 LLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQ 411
+ + + ID L N E E+ L+R +V++ K+E L EL+++R
Sbjct: 162 EAQRGRAEDRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRI 221
Query: 412 DYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRA 591
+ ++E L I +++++ + E +DF K+ ETE+KEL A RD T EN Y+++E+ A
Sbjct: 222 ELDQETLLRIDNQNKVKTILEEIDFMKRGFETELKELQAQAARDTTSENREYFKNELANA 281
Query: 592 LRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRS 771
+RDI+ EY+ ++G + +ME+ Y L++QEI T R N E + KEE R+++Q +R
Sbjct: 282 MRDIRAEYDQIMNGNRNDMESWYQLRVQEINTQSNRQNAENNYQKEEVKRLRNQTSELRQ 341
Query: 772 RIADLEMQNAEYEHNLNMIRGNYEETQRSLELKL 873
+++DLE +N E + + E+ QRS E L
Sbjct: 342 KLSDLESRNLLLEKQIEDLNYQLEDDQRSYEAAL 375
Score = 47.4 bits (111), Expect = 5e-05
Identities = 49/264 (18%), Positives = 118/264 (44%), Gaps = 9/264 (3%)
Frame = +1
Query: 97 IKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLMLLEDINGQYKSTIDK 276
+K +E E+++L+ +A + ++ EY ++L + DI +Y ++
Sbjct: 247 MKRGFETELKELQA--------QAARDTTSENREYFKNELANAM---RDIRAEYDQIMNG 295
Query: 277 QRQELGN-FEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQDYEREALAHITVEH 453
R ++ + ++ + E+ N +NA+ + +KEEVK LR++ +LRQ ++ +E
Sbjct: 296 NRNDMESWYQLRVQEINTQSNRQNAENNYQKEEVKRLRNQTSELRQKLSDLESRNLLLEK 355
Query: 454 ELQNLRETMDFEKQIHETEV--KELTTVAYRDPTKENMMYWQSEMGRALRDIQTEYENKL 627
++++L ++ +++ +E + K+ R+ + M+ Q L D + + +L
Sbjct: 356 QIEDLNYQLEDDQRSYEAALNDKDAQIRKLREECQALMVELQ-----MLLDTKQTLDGEL 410
Query: 628 SGIKQEMEAS---YGLQM---QEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLE 789
+Q +E + GL+ + +RTS + +T + S+ RS ++
Sbjct: 411 KVYRQMLEGNSEGNGLRQLVEKVVRTSAINEEADTETMRVVKGEHSSRTSYQRSAKGNVA 470
Query: 790 MQNAEYEHNLNMIRGNYEETQRSL 861
++ E ++ + + L
Sbjct: 471 IKETSPEGKFVILENTHRAKEEPL 494
>sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (Intermediate filament protein
A4) (IF-A4) (Cel IF A4)
Length = 575
Score = 153 bits (387), Expect = 5e-37
Identities = 88/274 (32%), Positives = 153/274 (55%)
Frame = +1
Query: 52 EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLM 231
++ L+G D++ +K +YE E+R ++L+ DS+K RA LE QI L EL++ R +L
Sbjct: 101 DLNLLRGKWGHDSTSVKVMYETELRSAKDLIADSDKERAQLEDQIKKLVEELNNYRNKLH 160
Query: 232 LLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQ 411
E + +D LG E E+ L+R + + K E + D L R
Sbjct: 161 EAERGADVTRKELDNVLGRLGALEAEIELLKRRISLMEESIGHLKRENHRMIDSLHHARN 220
Query: 412 DYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRA 591
E+E L I ++++Q L E DF ++IH++E+ +L +A RD T EN Y+++E+ A
Sbjct: 221 AVEQETLNRIDYQNQVQTLLEECDFIRRIHDSEIHDLLAMASRDTTVENREYFKNELSSA 280
Query: 592 LRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRS 771
+R+I++EY++ + + ++E+ Y L++QEI T +R+ +E + +EE R+++ + MR
Sbjct: 281 IREIRSEYDHVSNTTRTDIESWYKLKVQEIHTQNSRNCLEQNYAREEVKRLRTTLGDMRG 340
Query: 772 RIADLEMQNAEYEHNLNMIRGNYEETQRSLELKL 873
++ADLE +N E + + EE RS E L
Sbjct: 341 KMADLEGRNLLLEKQIEDLNYQMEEDMRSYEQSL 374
Score = 36.2 bits (82), Expect = 0.12
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = +1
Query: 628 SGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEY 807
S + M G IR S+TR+ E + E N R+ S I+ +R LE QN +
Sbjct: 46 SNLTSGMSPFGGHAASAIRESRTREKKEMS---ELNDRLASYIEKVRF----LEAQNRKM 98
Query: 808 EHNLNMIRGNYEETQRSLEL 867
E +LN++RG + S+++
Sbjct: 99 EKDLNLLRGKWGHDSTSVKV 118
>sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A)
Length = 497
Score = 152 bits (383), Expect = 2e-36
Identities = 91/280 (32%), Positives = 162/280 (57%), Gaps = 4/280 (1%)
Frame = +1
Query: 46 SCEIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKR 225
+ +++ L+G KDT ++ +YE E+++ R L+ND+ + R LE +I L EL + R++
Sbjct: 26 AADLDLLRGRWGKDTLSVRAMYEGELQEARKLVNDTNRQREELEKEIRKLLDELSEYRRK 85
Query: 226 LMLLEDINGQY--KSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELK 399
+ + G + ID+ +L E E+ LRR ++++ K+E +EL
Sbjct: 86 YE--DALRGHQIDRDRIDELLNQLSGLEAEINLLRRRIANIIEEIARIKKENLQFANELT 143
Query: 400 KLRQDYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSE 579
K R D ++E L I ++++Q L E +DF +++H+ E+ EL +A RD T EN Y+++E
Sbjct: 144 KARSDLDQETLNRIDFQNQVQTLLEEIDFMRRVHDQEIAELQAMASRDTTPENREYFKNE 203
Query: 580 MGRALRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQ 759
+ A+RDI+ EY+ + + +ME+ Y L++QEI+T TR N+E + K+ R++ Q+
Sbjct: 204 LASAIRDIRAEYDQICNVNRMDMESWYKLKVQEIQTQSTRQNLEQNYAKK---RLRVQLT 260
Query: 760 SMRSRIADLEMQNAEYEHNLNMIRGNY--EETQRSLELKL 873
+R ++ADLE +N+ + + NY E+ QRS E L
Sbjct: 261 DLRGKLADLEGRNSLLKQTQEL---NYQLEDDQRSYEAAL 297
>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (Intermediate filament protein
A3) (IF-A3) (Cel IF A3)
Length = 581
Score = 148 bits (373), Expect = 2e-35
Identities = 82/264 (31%), Positives = 149/264 (56%)
Frame = +1
Query: 82 KDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLMLLEDINGQYK 261
K T +K +YE+EI N++ ++ K+ E +I ++ +LD+LRK+ + + +
Sbjct: 112 KSTGSVKIMYEMEITTATNVVKETGKDHEEAEKEIGKIKDQLDELRKKFEEAQKGRAEDR 171
Query: 262 STIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQDYEREALAHI 441
ID+ L N E E+ L+R +V++ K+E L EL+++R + ++E L I
Sbjct: 172 LKIDELLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVRSELDQETLLRI 231
Query: 442 TVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRALRDIQTEYEN 621
++++ + E +DF K+ ETE+K+L A RD T EN Y+++E+ ++RDI+ EY+
Sbjct: 232 DNQNKVTTILEEIDFMKRGFETELKDLQAQAARDTTSENREYFKNELMNSIRDIRAEYDR 291
Query: 622 KLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNA 801
++G + ++E+ +++QEI T R N E H ++E R+ SQ+ ++S+ A+L +N
Sbjct: 292 FMAGNRNDLESWSQIRVQEINTQTNRQNAEINHKRDEVKRLHSQVSELKSKHAELAARNG 351
Query: 802 EYEHNLNMIRGNYEETQRSLELKL 873
E L + E+ QRS E L
Sbjct: 352 LLEKQLEDLNYQLEDDQRSYEAAL 375
Score = 44.3 bits (103), Expect = 5e-04
Identities = 56/298 (18%), Positives = 124/298 (41%), Gaps = 28/298 (9%)
Frame = +1
Query: 52 EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSL----EYELDDLR 219
E+ +LK + + TS+++ + E+ Q L D++ + +ID + E EL DL+
Sbjct: 201 EVARLKKENFRLTSELQRVRS-ELDQETLLRIDNQNKVTTILEEIDFMKRGFETELKDLQ 259
Query: 220 KR-----------------LMLLEDINGQYKSTIDKQRQELGNFEGELV-ELRRFKNTRN 345
+ + + DI +Y + R +L ++ V E+ N +N
Sbjct: 260 AQAARDTTSENREYFKNELMNSIRDIRAEYDRFMAGNRNDLESWSQIRVQEINTQTNRQN 319
Query: 346 ADVSKEKEEVKSLRDELKKLRQDYEREALAHITVEHELQNLRETMDFEKQIHETEVKELT 525
A+++ +++EVK L ++ +L+ + A + +E +L++L ++ +++ +E + +
Sbjct: 320 AEINHKRDEVKRLHSQVSELKSKHAELAARNGLLEKQLEDLNYQLEDDQRSYEAALNDKD 379
Query: 526 TVAYRDPTKENMMYWQSEMGRALRDIQT------EYENKLSGIKQEMEASYGLQMQEIRT 687
+ +E E+ L QT Y L G +E L + +RT
Sbjct: 380 AQVRK--LREECQALLVELQMLLDTKQTLDGELKVYRRMLEGNSEE-NGLRQLVEKVVRT 436
Query: 688 SKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEETQRSL 861
S + V+T + S+ RS ++ ++ E ++ + + + L
Sbjct: 437 SAINEEVDTETMRVVKGEHSSRTSYQRSAKGNVSIKEVSPEGKFVILENTHRDKEEPL 494
>sp|P31732|OV71_ONCVO Muscle cell intermediate filament protein OV71
Length = 432
Score = 137 bits (346), Expect = 3e-32
Identities = 76/224 (33%), Positives = 130/224 (58%)
Frame = +1
Query: 202 ELDDLRKRLMLLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKS 381
EL++ +KR + + ID +L N E E+ LRR + +VS+ K++
Sbjct: 5 ELEEYKKRYDEALKAHQADREVIDDLLVKLSNLEAEINLLRRRVSNLEEEVSRIKKDNLY 64
Query: 382 LRDELKKLRQDYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENM 561
+EL K R + ++E L I ++++Q L E +DF +++H+ E+ EL +A RD T EN
Sbjct: 65 FVNELNKARANLDQETLNRIDFQNQVQTLLEEIDFMRRVHDQEISELQAMAARDTTSENR 124
Query: 562 MYWQSEMGRALRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSR 741
Y+++E+ A+RDI+ EY+ + + +ME+ Y L++QEI+T TR N+E + KEE R
Sbjct: 125 EYFKNELSSAIRDIRAEYDQICNMNRTDMESWYKLKVQEIQTQSTRQNLEQGYAKEEVKR 184
Query: 742 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEETQRSLELKL 873
++ Q+ +R ++ADLE +N+ E + + E+ QRS E L
Sbjct: 185 LRVQLSDLRGKLADLEGRNSLLEKQMQELNYQLEDDQRSYEAAL 228
>sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B)
Length = 589
Score = 135 bits (339), Expect = 2e-31
Identities = 77/274 (28%), Positives = 150/274 (54%)
Frame = +1
Query: 52 EIEQLKGGSVKDTSKIKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLM 231
++++L+G KDTS+IK Y +R R ++D + +A ++V++ L +L +LR R
Sbjct: 112 DLDELRGRWGKDTSEIKIQYSDSLRDARKEIDDGARRKAEIDVKVARLRDDLAELRNRYE 171
Query: 232 LLEDINGQYKSTIDKQRQELGNFEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQ 411
++ + I++ + + + + EL LR + + + + +EL+K R
Sbjct: 172 DVQHRRESDREKINQWQHAIEDAQSELEMLRARWRQLTEEEKRLNGDNARIWEELQKARN 231
Query: 412 DYEREALAHITVEHELQNLRETMDFEKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRA 591
D + E L I ++++Q L E ++F +++HE EVKEL + + P + ++++E+ A
Sbjct: 232 DLDEETLGRIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPA-DTREFFKNELALA 290
Query: 592 LRDIQTEYENKLSGIKQEMEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRS 771
+RDI+ EY+ KQ+ME+ Y L++ E++ S R N+E+++ +EE R++ I +R
Sbjct: 291 IRDIKDEYDYIAKQGKQDMESWYKLKVSEVQGSANRANMESSYQREEVKRMRDNIGDLRG 350
Query: 772 RIADLEMQNAEYEHNLNMIRGNYEETQRSLELKL 873
++ DLE +NA E + + + QR E L
Sbjct: 351 KLGDLEAKNALLEKEVQNLNYQLNDDQRQYEAAL 384
Score = 44.3 bits (103), Expect = 5e-04
Identities = 53/262 (20%), Positives = 113/262 (43%), Gaps = 21/262 (8%)
Frame = +1
Query: 97 IKEIYEVEIRQLRNLLNDSEKNRAPLEVQIDSLEYELDDLRKRLMLLEDINGQYKSTIDK 276
++ ++E E+++L+ LL + D+ E+ ++L + + DI +Y +
Sbjct: 257 LRRVHEQEVKELQALL---------AQAPADTREFFKNELA---LAIRDIKDEYDYIAKQ 304
Query: 277 QRQELGN-FEGELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQDYEREALAHITVEH 453
+Q++ + ++ ++ E++ N N + S ++EEVK +RD + LR + +E
Sbjct: 305 GKQDMESWYKLKVSEVQGSANRANMESSYQREEVKRMRDNIGDLRGKLGDLEAKNALLEK 364
Query: 454 ELQNLRETMDFEKQIHETEVKE------------LTTVAYRDPTKENMMYWQSEMGRALR 597
E+QNL ++ +++ +E + + T VA + +E+ A+
Sbjct: 365 EVQNLNYQLNDDQRQYEAALNDRDATLRRMREECQTLVAELQALLDTKQMLDAEI--AIY 422
Query: 598 DIQTEYENKLSGIKQEME---ASYGLQMQEIRTSKTRD-----NVETTHYKEENSRIKSQ 753
E E G++Q +E ++ LQ QE T TR+ + +TT + +
Sbjct: 423 RKMLEGEESRVGLRQMVEQVVKTHSLQQQE-DTDSTRNVRGEVSTKTTFQRSAKGNVTIS 481
Query: 754 IQSMRSRIADLEMQNAEYEHNL 819
+ LE + + NL
Sbjct: 482 ECDPNGKFITLENTHRSKDENL 503
>sp|Q17107|AV71_ACAVI Muscle cell intermediate filament protein AV71
Length = 394
Score = 129 bits (325), Expect = 8e-30
Identities = 69/189 (36%), Positives = 115/189 (60%)
Frame = +1
Query: 307 ELVELRRFKNTRNADVSKEKEEVKSLRDELKKLRQDYEREALAHITVEHELQNLRETMDF 486
E+ +RR N +V++ K++ L +EL K R D ++E L I +++LQ L E +DF
Sbjct: 2 EINLVRRRVNNLEEEVTRIKKDNLYLVNELNKARSDLDQETLNRIDFQNQLQTLLEEIDF 61
Query: 487 EKQIHETEVKELTTVAYRDPTKENMMYWQSEMGRALRDIQTEYENKLSGIKQEMEASYGL 666
+++H+ E+ EL +A RD T EN Y+++E+ A+RDI+ EY+ + + +ME+ Y L
Sbjct: 62 MRRVHDQEITELQAMAARDTTPENREYFKNELSSAIRDIRAEYDQICNINRTDMESWYKL 121
Query: 667 QMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNMIRGNYEE 846
++QEI+T TR N+E + KEE R++ Q+ +R ++ADLE +N+ E + E+
Sbjct: 122 KVQEIQTQSTRQNLEQGYAKEEVKRLRVQLSELRGKLADLEGRNSLLEKQTQELNYQLED 181
Query: 847 TQRSLELKL 873
QRS E L
Sbjct: 182 DQRSYEAAL 190
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.130 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,589,776
Number of Sequences: 369166
Number of extensions: 1443679
Number of successful extensions: 7426
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6879
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)