Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_B01
(626 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (I... 76 8e-14
sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (I... 70 3e-12
sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B) 70 6e-12
sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (I... 69 1e-11
sp|P31732|OV71_ONCVO Muscle cell intermediate filament prot... 67 4e-11
sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (I... 67 5e-11
sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (I... 66 6e-11
sp|Q17107|AV71_ACAVI Muscle cell intermediate filament prot... 64 2e-10
sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A) 64 3e-10
sp|Q19286|IFB2_CAEEL Intermediate filament protein ifb-2 (I... 63 5e-10
>sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (Intermediate filament protein
A4) (IF-A4) (Cel IF A4)
Length = 575
Score = 75.9 bits (185), Expect = 8e-14
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Frame = +1
Query: 166 ETTDYQSKRMKFRRTTKGNISIAETDLTGSFIILENIGTKVESLEGMTIKRAIEGNSNQI 345
ETT + S + R+ KGNI+I E + +G +I+LENI + E++ ++R I G +I
Sbjct: 453 ETTSHSS----YSRSAKGNIAIQEAEPSGKYIVLENISRRDENIGDWKLRRKIAG-KREI 507
Query: 346 SYTISSKVTLNAGEKISLVSRGKKTGKGLEIETD------EASWGVGNNVVTTSYDSEGV 507
+T + TL A + + + +R G+G+ D E S+G GN+VVTT Y+ EG
Sbjct: 508 VFTFpreFTLRAQKSVKIFAR----GQGVHSPPDSLVYDLEDSFGTGNDVVTTLYNKEGE 563
Query: 508 EKAAHYQEVS 537
++A+H Q S
Sbjct: 564 DRASHSQRAS 573
>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (Intermediate filament protein
A2) (IF-A2) (Cel IF A2)
Length = 581
Score = 70.5 bits (171), Expect = 3e-12
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Frame = +1
Query: 157 TERETTDYQSKRMKFRRTTKGNISIAETDLTGSFIILENI-GTKVESLEGMTIKRAIEGN 333
T R S R ++R+ KGN++I ET G F+ILEN K E L +KR I+G
Sbjct: 447 TMRVVKGEHSSRTSYQRSAKGNVAIKETSPEGKFVILENTHRAKEEPLGDWKLKRKIDG- 505
Query: 334 SNQISYTISSKVTLNAGEKISLVSRGKKTGKGLEI---ETDEASWGVGNNVVTTSYDSEG 504
+I +T S L+ + + + +RG+ E+ E DE ++GVG NV T Y+++G
Sbjct: 506 KREIVFTFPSDYILHPFQSVKIFARGQGIANPPEVLIFEGDE-TFGVGANVQTILYNNKG 564
Query: 505 VEKAAHYQEVS 537
E+A H Q S
Sbjct: 565 EERATHIQRQS 575
>sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B)
Length = 589
Score = 69.7 bits (169), Expect = 6e-12
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Frame = +1
Query: 184 SKRMKFRRTTKGNISIAETDLTGSFIILENI-GTKVESLEGMTIKRAIEGNSNQISYTIS 360
S + F+R+ KGN++I+E D G FI LEN +K E+L +KR ++ N +I YTI
Sbjct: 465 STKTTFQRSAKGNVTISECDPNGKFITLENTHRSKDENLGEHRLKRKLD-NRREIVYTIP 523
Query: 361 SKVTLNAGEKISLVSR---GKKTGKGLEIETDEASWGVGNNVVTTSYDSEGVEKAAHYQE 531
L AG + + +R G + E +WG+G NVVT+ + +G E+A H Q+
Sbjct: 524 PNTVLKAGRTMKIYARDQGGIHNPPDTLVFDGENTWGIGANVVTSLINKDGDERATHTQK 583
>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (Intermediate filament protein
A1) (IF-A1) (Cel IF A1)
Length = 575
Score = 68.6 bits (166), Expect = 1e-11
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Frame = +1
Query: 157 TERETTDYQSKRMKFRRTTKGNISIAETDLTGSFIILENI-GTKVESLEGMTIKRAIEGN 333
T R + R F+R+ KGN+SI E G FI+L+N K E++ +KR I+G
Sbjct: 445 TMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGK 504
Query: 334 SNQISYTISSKVTLNAGEKISLVSRGKKTGKGLE--IETDEASWGVGNNVVTTSYDSEGV 507
+ YT+ L AG+ + + +R + + + E S+G GNNV T ++ EG
Sbjct: 505 RENV-YTLPRDFVLRAGKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGE 563
Query: 508 EKAAHYQEVS 537
E+A H Q S
Sbjct: 564 ERATHIQRQS 573
>sp|P31732|OV71_ONCVO Muscle cell intermediate filament protein OV71
Length = 432
Score = 67.0 bits (162), Expect = 4e-11
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Frame = +1
Query: 184 SKRMKFRRTTKGNISIAETDLTGSFIILENI-GTKVESLEGMTIKRAIEGNSNQISYTIS 360
+ R F+R+ KGN+SI + G FI+LEN +K E + +KR I+G +I YT
Sbjct: 309 ASRTSFQRSAKGNVSIQDASSDGKFILLENTHRSKEEPIGEWRLKRKIDG-KREIVYTFP 367
Query: 361 SKVTLNAGEKISLVSRGKKTGKGLE--IETDEASWGVGNNVVTTSYDSEGVEKAAHYQEV 534
L G+ + + +RG+ + + E S+GVG+NV T ++ EG E+A+H Q
Sbjct: 368 RDFILKPGKTVKIWARGQGVYSPPDQLVFDAEDSFGVGSNVQTILFNKEGEERASHIQRS 427
Query: 535 S 537
S
Sbjct: 428 S 428
>sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (Intermediate filament protein
B1) (IF-B1) (Cel IF B1)
Length = 589
Score = 66.6 bits (161), Expect = 5e-11
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Frame = +1
Query: 184 SKRMKFRRTTKGNISIAETDLTGSFIILENI-GTKVESLEGMTIKRAIEGNSNQISYTIS 360
S + F+R+ KGN++I+E D G FI LEN K E++ I+R ++G +I Y+I
Sbjct: 465 STKTTFQRSAKGNVTISECDPNGKFIKLENSHRNKDENVGEHKIRRKLDGR-REIVYSIP 523
Query: 361 SKVTLNAGEKISLVSR---GKKTGKGLEIETDEASWGVGNNVVTTSYDSEGVEKAAHYQE 531
+ V + G+ +++ +R G + E +WG+G NVVT+ + +G E+A H Q+
Sbjct: 524 ANVVIKPGKNLTIYARDQGGINNPPESLVFDGENTWGIGANVVTSLVNKDGEERATHTQK 583
>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (Intermediate filament protein
A3) (IF-A3) (Cel IF A3)
Length = 581
Score = 66.2 bits (160), Expect = 6e-11
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Frame = +1
Query: 157 TERETTDYQSKRMKFRRTTKGNISIAETDLTGSFIILENI-GTKVESLEGMTIKRAIEGN 333
T R S R ++R+ KGN+SI E G F+ILEN K E L +KR I+G
Sbjct: 447 TMRVVKGEHSSRTSYQRSAKGNVSIKEVSPEGKFVILENTHRDKEEPLGDWKLKRKIDG- 505
Query: 334 SNQISYTISSKVTLNAGEKISLVSRGKKTGKGLEIETDEA--SWGVGNNVVTTSYDSEGV 507
+I +T S L+ + + + +RG E+ E ++G G NV T Y++ G
Sbjct: 506 KREIVFTFPSDYILHPVQTVKIFARGNGVANPPEVLVFEGDDTFGAGANVQTILYNNSGE 565
Query: 508 EKAAHYQEVS 537
E+A H Q S
Sbjct: 566 ERATHMQRQS 575
>sp|Q17107|AV71_ACAVI Muscle cell intermediate filament protein AV71
Length = 394
Score = 64.3 bits (155), Expect = 2e-10
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Frame = +1
Query: 184 SKRMKFRRTTKGNISIAETDLTGSFIILENIG-TKVESLEGMTIKRAIEGNSNQISYTIS 360
+ R F+R+ KGN+SI + G +I+ EN +K E + +KR I+G +I YT
Sbjct: 271 ASRTSFQRSAKGNVSIQDAASDGKYILSENTHRSKEEPIGEWRLKRKIDGK-REIVYTFP 329
Query: 361 SKVTLNAGEKISLVSRGKKTGKGLE--IETDEASWGVGNNVVTTSYDSEGVEKAAHYQEV 534
+ L G+ + + +RG+ + + E S+G+G+NV T ++ EG E+A+H Q
Sbjct: 330 TNFVLKPGKSVKIWARGQGVYSPPDQLVFDAEDSFGIGSNVQTILFNKEGEERASHIQRS 389
Query: 535 S 537
S
Sbjct: 390 S 390
>sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A)
Length = 497
Score = 63.9 bits (154), Expect = 3e-10
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 7/125 (5%)
Frame = +1
Query: 184 SKRMKFRRTTKGNISIAETDLTGSFIILENI-GTKVESLEGMTIKRAIEGNSNQISYTIS 360
+ R F+R+ KGN+SI ET G +++LEN +K E++ +KR I+G +I YT+
Sbjct: 374 ASRTSFQRSAKGNVSIQETAPDGRYVVLENTHRSKEEAIGEWKLKRKIDG-KREIVYTLP 432
Query: 361 SKVTLNAGEKISLVSRGKKTGKGLEIETD------EASWGVGNNVVTTSYDSEGVEKAAH 522
L G+ + + +RG+ G+ + E ++G G+NV T ++ EG E+A H
Sbjct: 433 RDFILRPGKSVKIWARGQ---GGIHSPPEQLVFDLEDTFGSGSNVQTILFNREGEERATH 489
Query: 523 YQEVS 537
Q S
Sbjct: 490 IQRSS 494
>sp|Q19286|IFB2_CAEEL Intermediate filament protein ifb-2 (Intermediate filament protein
B2) (IF-B2) (Cel IF B2)
Length = 543
Score = 63.2 bits (152), Expect = 5e-10
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Frame = +1
Query: 190 RMKFRRTTKGNISIAETDLTGSFIILENI-GTKVESLEGMTIKRAIEGNSNQISYTISSK 366
R F+R KGN+SI E D G +IILEN G+ E + I+R I+G + + S
Sbjct: 421 RSSFKRHAKGNVSIVECDPQGKYIILENTSGSVAEDVSNFEIRRVIDG-VQAFVFRLPSH 479
Query: 367 VTLNAGEKISLVSR---GKKTGKGLEIETDEASWGVGNNVVTTSYDSEGVEKAAHYQEVS 537
+ + + + R G + + SWG G V T Y+S G+EKA+H Q
Sbjct: 480 LVIQQHGHLKIYGRNSGGINSPPDSIVMESHPSWGQGGQVETFLYNSHGIEKASHIQTTV 539
Query: 538 A 540
A
Sbjct: 540 A 540
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.130 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,799,719
Number of Sequences: 369166
Number of extensions: 733260
Number of successful extensions: 2220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2201
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)