Planaria EST Database

DrC_00181

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00181
         (853 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q964E1|ACTC_BIOOB  Actin, cytoplasmic                          121   3e-27
sp|P53460|ACT1_HALRO  Actin, muscle 1A                            121   3e-27
sp|P69003|ACT1_HELTB  Actin, cytoplasmic CyI >gi|67462094|sp...   121   3e-27
sp|P41113|ACT3_PODCA  Actin-3                                     120   4e-27
sp|P17126|ACT_HYDAT  Actin, non-muscle 6.2                        120   4e-27
sp|Q964E0|ACTC_BIOTE  Actin, cytoplasmic                          120   5e-27
sp|Q964E3|ACTC_BIOAL  Actin, cytoplasmic                          120   5e-27
sp|P12716|ACTC_PISOC  Actin, cytoplasmic                          120   5e-27
sp|P08023|ACTA_CHICK  Actin, aortic smooth muscle (Alpha-actin)   120   6e-27
sp|P04752|ACT3_XENLA  Actin, alpha sarcomeric/skeletal (Acti...   120   6e-27

>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
          Length = 376

 Score =  121 bits (303), Expect = 3e-27
 Identities = 57/64 (89%), Positives = 61/64 (95%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           E LFQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT
Sbjct: 260 EALFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319

Query: 14  SLAP 3
           +LAP
Sbjct: 320 ALAP 323

>sp|P53460|ACT1_HALRO Actin, muscle 1A
          Length = 378

 Score =  121 bits (303), Expect = 3e-27
 Identities = 57/64 (89%), Positives = 62/64 (96%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           ETLFQPSFIG+E AGIHETTYNSIMKCD+DIRKDLYAN VLSGGSTM+PGI+DRMQKEIT
Sbjct: 262 ETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGSTMYPGIADRMQKEIT 321

Query: 14  SLAP 3
           +LAP
Sbjct: 322 ALAP 325

>sp|P69003|ACT1_HELTB Actin, cytoplasmic CyI
 sp|P69002|ACT1_HELER Actin, cytoplasmic CyI
          Length = 376

 Score =  121 bits (303), Expect = 3e-27
 Identities = 57/64 (89%), Positives = 62/64 (96%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           E+LFQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT
Sbjct: 260 ESLFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319

Query: 14  SLAP 3
           +LAP
Sbjct: 320 ALAP 323

>sp|P41113|ACT3_PODCA Actin-3
          Length = 376

 Score =  120 bits (302), Expect = 4e-27
 Identities = 57/64 (89%), Positives = 62/64 (96%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           ETLFQP+FIG+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGG+TMFPGI+DRMQKEI+
Sbjct: 260 ETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEIS 319

Query: 14  SLAP 3
           SLAP
Sbjct: 320 SLAP 323

>sp|P17126|ACT_HYDAT Actin, non-muscle 6.2
          Length = 376

 Score =  120 bits (302), Expect = 4e-27
 Identities = 57/64 (89%), Positives = 62/64 (96%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           ETLFQPSFIG+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGG+TMFPGI+DRMQKEI+
Sbjct: 260 ETLFQPSFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEIS 319

Query: 14  SLAP 3
           +LAP
Sbjct: 320 ALAP 323

>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
          Length = 376

 Score =  120 bits (301), Expect = 5e-27
 Identities = 56/64 (87%), Positives = 61/64 (95%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           E +FQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT
Sbjct: 260 EAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319

Query: 14  SLAP 3
           +LAP
Sbjct: 320 ALAP 323

>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
          Length = 376

 Score =  120 bits (301), Expect = 5e-27
 Identities = 56/64 (87%), Positives = 61/64 (95%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           E +FQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT
Sbjct: 260 EAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319

Query: 14  SLAP 3
           +LAP
Sbjct: 320 ALAP 323

>sp|P12716|ACTC_PISOC Actin, cytoplasmic
          Length = 376

 Score =  120 bits (301), Expect = 5e-27
 Identities = 56/64 (87%), Positives = 61/64 (95%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           E LFQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKE+T
Sbjct: 260 EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEVT 319

Query: 14  SLAP 3
           +LAP
Sbjct: 320 ALAP 323

>sp|P08023|ACTA_CHICK Actin, aortic smooth muscle (Alpha-actin)
          Length = 377

 Score =  120 bits (300), Expect = 6e-27
 Identities = 56/64 (87%), Positives = 62/64 (96%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           ETLFQPSFIG+E AGIHETTYNSIMKCD+DIRKDLYAN VLSGG+TM+PGI+DRMQKEIT
Sbjct: 261 ETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEIT 320

Query: 14  SLAP 3
           +LAP
Sbjct: 321 ALAP 324

>sp|P04752|ACT3_XENLA Actin, alpha sarcomeric/skeletal (Actin alpha 3)
          Length = 377

 Score =  120 bits (300), Expect = 6e-27
 Identities = 56/64 (87%), Positives = 62/64 (96%)
 Frame = -3

Query: 194 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 15
           ETLFQPSFIG+E AGIHETTYNSIMKCD+DIRKDLYAN VLSGG+TM+PGI+DRMQKEIT
Sbjct: 261 ETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEIT 320

Query: 14  SLAP 3
           +LAP
Sbjct: 321 ALAP 324

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,792,592
Number of Sequences: 369166
Number of extensions: 1321053
Number of successful extensions: 3984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3980
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00181

  1. Dr_sW_028_B17
  2. Dr_sW_002_E21
  3. Dr_sW_018_H14
  4. Dr_sW_014_L03
  5. Dr_sW_024_M03
  6. Dr_sW_007_D06
  7. Dr_sW_025_M23
  8. Dr_sW_025_N22
  9. Dr_sW_005_J06
  10. Dr_sW_023_J06
  11. Dr_sW_015_D03
  12. Dr_sW_012_O04
  13. Dr_sW_016_O20
  14. Dr_sW_022_B23
  15. Dr_sW_017_M06
  16. Dr_sW_016_E15
  17. Dr_sW_013_G16
  18. Dr_sW_022_C24
  19. Dr_sW_010_D17
  20. Dr_sW_011_G03
  21. Dr_sW_013_J19
  22. Dr_sW_003_F10
  23. Dr_sW_004_I06
  24. Dr_sW_011_A14
  25. Dr_sW_004_I05
  26. Dr_sW_006_P08
  27. Dr_sW_002_D14
  28. Dr_sW_022_N24
  29. Dr_sW_004_F21
  30. Dr_sW_022_D20
  31. Dr_sW_025_J08
  32. Dr_sW_024_A07
  33. Dr_sW_024_D09
  34. Dr_sW_010_M15
  35. Dr_sW_023_A03
  36. Dr_sW_026_I07
  37. Dr_sW_026_O22
  38. Dr_sW_015_B14
  39. Dr_sW_008_F14
  40. Dr_sW_006_K07
  41. Dr_sW_024_B08
  42. Dr_sW_023_O20
  43. Dr_sW_015_F24
  44. Dr_sW_009_P11
  45. Dr_sW_015_H24
  46. Dr_sW_013_M11
  47. Dr_sW_006_I03
  48. Dr_sW_027_F16
  49. Dr_sW_018_I22
  50. Dr_sW_016_K01
  51. Dr_sW_003_F06
  52. Dr_sW_026_F03
  53. Dr_sW_026_J11
  54. Dr_sW_017_K02
  55. Dr_sW_025_E17
  56. Dr_sW_010_C03
  57. Dr_sW_017_D12
  58. Dr_sW_004_J08
  59. Dr_sW_018_D14
  60. Dr_sW_003_E01
  61. Dr_sW_024_E18
  62. Dr_sW_005_F22