Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_B08
(645 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase 32 1.4
sp|P74374|RECN_SYNY3 DNA repair protein recN (Recombination... 29 9.1
>sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase
Length = 303
Score = 32.0 bits (71), Expect = 1.4
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +1
Query: 415 LYFICIDICLMYLLMLDFRSVLRISNGKAACIFFI 519
L+ ICI + L++L L+ R ++++ +G +CI+ I
Sbjct: 200 LWNICIFLILIFLFRLNIRGLMKLPSGALSCIYLI 234
>sp|P74374|RECN_SYNY3 DNA repair protein recN (Recombination protein N)
Length = 584
Score = 29.3 bits (64), Expect = 9.1
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = -3
Query: 640 QLYKYI*QLFTIKLTNSITQEQVRLQHKYTKLTQNPCTKAQ*KKYMLPFHWKFVEHYGNL 461
Q+ K I + + LT +I ++ ++Q +Y +LT + AQ ++ + + ++H G L
Sbjct: 314 QVLKRICRKYGPSLTEAIAYQE-KIQAEYDQLTDGEQSLAQLQESLTKAEQELIKHCGQL 372
Query: 460 TLI 452
TLI
Sbjct: 373 TLI 375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,075,094
Number of Sequences: 369166
Number of extensions: 838826
Number of successful extensions: 2518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2517
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)