Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_J06
(414 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase 32 0.51
sp|P35559|IDE_RAT Insulin-degrading enzyme (Insulysin) (Ins... 28 5.6
sp|P14735|IDE_HUMAN Insulin-degrading enzyme (Insulysin) (I... 28 5.6
sp|P17221|FEM1_CAEEL Sex-determining protein fem-1 (Feminiz... 28 7.3
sp|P47043|ZAP1_YEAST Zinc-responsive transcriptional regula... 28 7.3
sp|P74374|RECN_SYNY3 DNA repair protein recN (Recombination... 28 9.6
sp|P57368|Y281_BUCAI Hypothetical transport protein BU281 28 9.6
>sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase
Length = 303
Score = 32.0 bits (71), Expect = 0.51
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 182 LYFICIDICLMYLLMLDFRSVLRISNGKAACIFFI 286
L+ ICI + L++L L+ R ++++ +G +CI+ I
Sbjct: 200 LWNICIFLILIFLFRLNIRGLMKLPSGALSCIYLI 234
>sp|P35559|IDE_RAT Insulin-degrading enzyme (Insulysin) (Insulinase) (Insulin
protease)
Length = 1019
Score = 28.5 bits (62), Expect = 5.6
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 411 DNYINIF*QLFTIKFNKFNHTRTSTPTT*IHQTHTKPMYK----GTIKKIHAAFPLEIRR 244
D+ N+ +LF+ NK N P + H K +YK I+ ++ FP+ +
Sbjct: 265 DDLTNLVVKLFSEVENK-NVPLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQ 323
Query: 243 TLRKSNINKYIRHMSIH 193
KSN Y+ H+ H
Sbjct: 324 QYYKSNPGHYLGHLIGH 340
>sp|P14735|IDE_HUMAN Insulin-degrading enzyme (Insulysin) (Insulinase) (Insulin
protease)
Length = 1019
Score = 28.5 bits (62), Expect = 5.6
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 411 DNYINIF*QLFTIKFNKFNHTRTSTPTT*IHQTHTKPMYK----GTIKKIHAAFPLEIRR 244
D+ N+ +LF+ NK N P + H K +YK I+ ++ FP+ +
Sbjct: 265 DDLTNLVVKLFSEVENK-NVPLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQ 323
Query: 243 TLRKSNINKYIRHMSIH 193
KSN Y+ H+ H
Sbjct: 324 KYYKSNPGHYLGHLIGH 340
>sp|P17221|FEM1_CAEEL Sex-determining protein fem-1 (Feminization of XX and XO animals
protein 1)
Length = 656
Score = 28.1 bits (61), Expect = 7.3
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -1
Query: 324 IHQTHTKPMYKGTI---KKIHAAFPLEIRRTLRKSNINKYIRHMSIHMKY 184
+ Q H P+Y GTI + H F + + + + N+ +R S +KY
Sbjct: 375 LQQKHFAPLYYGTITTLQSFHETFSMSLNDFVNNHHANRNLRVRSSWVKY 424
>sp|P47043|ZAP1_YEAST Zinc-responsive transcriptional regulator ZAP1
Length = 880
Score = 28.1 bits (61), Expect = 7.3
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = -1
Query: 324 IHQTHTKPMYKGTIKKIHAAFPLEIRRTLRKSNINKYIRHMSIHMKYNTLSC 169
+H T K Y+ H FP K IRH+ +H KY C
Sbjct: 729 VHLTRGKSEYQCLWHDCHRTFPQR----------QKLIRHLKVHSKYKPYKC 770
>sp|P74374|RECN_SYNY3 DNA repair protein recN (Recombination protein N)
Length = 584
Score = 27.7 bits (60), Expect = 9.6
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -2
Query: 371 NLTNSITQEQVRLQHKYTKLTQNPCTKAQ*KKYMLPFHWKFVEHYGNLTLI 219
+LT +I ++ ++Q +Y +LT + AQ ++ + + ++H G LTLI
Sbjct: 326 SLTEAIAYQE-KIQAEYDQLTDGEQSLAQLQESLTKAEQELIKHCGQLTLI 375
>sp|P57368|Y281_BUCAI Hypothetical transport protein BU281
Length = 307
Score = 27.7 bits (60), Expect = 9.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 253 FQWKGSMYFFYCAFVHGFCVSLVYLCCRRTC 345
FQWKG + + F H F +Y C++ C
Sbjct: 148 FQWKGILALLFALFSHAF----IYSECQKKC 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,052,354
Number of Sequences: 369166
Number of extensions: 744619
Number of successful extensions: 2224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2223
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)