Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_L03
(671 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q41046|PHY_PINSY Phytochrome 32 2.0
sp|Q49YZ1|AGRB_STAS1 Accessory gene regulator protein B 31 2.6
>sp|Q41046|PHY_PINSY Phytochrome
Length = 1131
Score = 31.6 bits (70), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 614 NSNHTKKQSTPTNIKYTKTHTKTQCTKGTIKKKY 513
NS HT+ QST +N + + T+T T K T +Y
Sbjct: 4 NSRHTQSQSTGSNNRRSSTNTNTTTNKATAMAQY 37
>sp|Q49YZ1|AGRB_STAS1 Accessory gene regulator protein B
Length = 189
Score = 31.2 bits (69), Expect = 2.6
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = -1
Query: 641 KLFTIKI*QNSNHTKKQSTPTNIKYTKTHTKTQCTKGTIKKK---YMLPFPLENFVETLT 471
K KI + ++++ I+Y K Q K Y + F+ TLT
Sbjct: 3 KFIDAKIDNFAKQLQQRNNLDRIEYLKMRLGMQVVVNNFFKTIVIYGVSLLCHMFLYTLT 62
Query: 470 ENLTFKKYIRHMSNTYENTNTLSCYILSYFF 378
+LTF +IRH ++ N+L CYI S +
Sbjct: 63 VHLTFF-FIRHFAHGAHAKNSLLCYIQSVIY 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,523,310
Number of Sequences: 369166
Number of extensions: 857402
Number of successful extensions: 2488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2482
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)