Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_F10
(589 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase 30 3.4
sp|P74374|RECN_SYNY3 DNA repair protein recN (Recombination... 29 7.6
>sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase
Length = 303
Score = 30.4 bits (67), Expect = 3.4
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 358 LYFICIDICLMYLLMLDFRSVLLISNGKAACIFFI 462
L+ ICI + L++L L+ R ++ + +G +CI+ I
Sbjct: 200 LWNICIFLILIFLFRLNIRGLMKLPSGALSCIYLI 234
>sp|P74374|RECN_SYNY3 DNA repair protein recN (Recombination protein N)
Length = 584
Score = 29.3 bits (64), Expect = 7.6
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -1
Query: 547 NLTNSITQEQVRLQHKYTKLTQNPCTKAQ*KKYMLPFHWKLVEHYGNLTLI 395
+LT +I ++ ++Q +Y +LT + AQ ++ + +L++H G LTLI
Sbjct: 326 SLTEAIAYQE-KIQAEYDQLTDGEQSLAQLQESLTKAEQELIKHCGQLTLI 375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,226,191
Number of Sequences: 369166
Number of extensions: 749709
Number of successful extensions: 2199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2199
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)