Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_J06
(850 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 121 3e-27
sp|P53460|ACT1_HALRO Actin, muscle 1A 121 3e-27
sp|P69003|ACT1_HELTB Actin, cytoplasmic CyI >gi|67462094|sp... 121 3e-27
sp|P41113|ACT3_PODCA Actin-3 120 4e-27
sp|P17126|ACT_HYDAT Actin, non-muscle 6.2 120 4e-27
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 120 5e-27
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 120 5e-27
sp|P12716|ACTC_PISOC Actin, cytoplasmic 120 5e-27
sp|P08023|ACTA_CHICK Actin, aortic smooth muscle (Alpha-actin) 120 6e-27
sp|P04752|ACT3_XENLA Actin, alpha sarcomeric/skeletal (Acti... 120 6e-27
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 121 bits (303), Expect = 3e-27
Identities = 57/64 (89%), Positives = 61/64 (95%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
E LFQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT
Sbjct: 260 EALFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319
Query: 837 SLAP 848
+LAP
Sbjct: 320 ALAP 323
>sp|P53460|ACT1_HALRO Actin, muscle 1A
Length = 378
Score = 121 bits (303), Expect = 3e-27
Identities = 57/64 (89%), Positives = 62/64 (96%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
ETLFQPSFIG+E AGIHETTYNSIMKCD+DIRKDLYAN VLSGGSTM+PGI+DRMQKEIT
Sbjct: 262 ETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGSTMYPGIADRMQKEIT 321
Query: 837 SLAP 848
+LAP
Sbjct: 322 ALAP 325
>sp|P69003|ACT1_HELTB Actin, cytoplasmic CyI
sp|P69002|ACT1_HELER Actin, cytoplasmic CyI
Length = 376
Score = 121 bits (303), Expect = 3e-27
Identities = 57/64 (89%), Positives = 62/64 (96%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
E+LFQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT
Sbjct: 260 ESLFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319
Query: 837 SLAP 848
+LAP
Sbjct: 320 ALAP 323
>sp|P41113|ACT3_PODCA Actin-3
Length = 376
Score = 120 bits (302), Expect = 4e-27
Identities = 57/64 (89%), Positives = 62/64 (96%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
ETLFQP+FIG+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGG+TMFPGI+DRMQKEI+
Sbjct: 260 ETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEIS 319
Query: 837 SLAP 848
SLAP
Sbjct: 320 SLAP 323
>sp|P17126|ACT_HYDAT Actin, non-muscle 6.2
Length = 376
Score = 120 bits (302), Expect = 4e-27
Identities = 57/64 (89%), Positives = 62/64 (96%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
ETLFQPSFIG+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGG+TMFPGI+DRMQKEI+
Sbjct: 260 ETLFQPSFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEIS 319
Query: 837 SLAP 848
+LAP
Sbjct: 320 ALAP 323
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 120 bits (301), Expect = 5e-27
Identities = 56/64 (87%), Positives = 61/64 (95%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
E +FQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT
Sbjct: 260 EAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319
Query: 837 SLAP 848
+LAP
Sbjct: 320 ALAP 323
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 120 bits (301), Expect = 5e-27
Identities = 56/64 (87%), Positives = 61/64 (95%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
E +FQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKEIT
Sbjct: 260 EAMFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319
Query: 837 SLAP 848
+LAP
Sbjct: 320 ALAP 323
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 120 bits (301), Expect = 5e-27
Identities = 56/64 (87%), Positives = 61/64 (95%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
E LFQPSF+G+E AGIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMFPGI+DRMQKE+T
Sbjct: 260 EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEVT 319
Query: 837 SLAP 848
+LAP
Sbjct: 320 ALAP 323
>sp|P08023|ACTA_CHICK Actin, aortic smooth muscle (Alpha-actin)
Length = 377
Score = 120 bits (300), Expect = 6e-27
Identities = 56/64 (87%), Positives = 62/64 (96%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
ETLFQPSFIG+E AGIHETTYNSIMKCD+DIRKDLYAN VLSGG+TM+PGI+DRMQKEIT
Sbjct: 261 ETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEIT 320
Query: 837 SLAP 848
+LAP
Sbjct: 321 ALAP 324
>sp|P04752|ACT3_XENLA Actin, alpha sarcomeric/skeletal (Actin alpha 3)
Length = 377
Score = 120 bits (300), Expect = 6e-27
Identities = 56/64 (87%), Positives = 62/64 (96%)
Frame = +3
Query: 657 ETLFQPSFIGLECAGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMFPGISDRMQKEIT 836
ETLFQPSFIG+E AGIHETTYNSIMKCD+DIRKDLYAN VLSGG+TM+PGI+DRMQKEIT
Sbjct: 261 ETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEIT 320
Query: 837 SLAP 848
+LAP
Sbjct: 321 ALAP 324
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,635,141
Number of Sequences: 369166
Number of extensions: 1317472
Number of successful extensions: 3982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3978
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)