Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_M15
(326 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase 32 0.45
sp|P17221|FEM1_CAEEL Sex-determining protein fem-1 (Feminiz... 28 6.5
sp|P47043|ZAP1_YEAST Zinc-responsive transcriptional regula... 28 6.5
sp|P74374|RECN_SYNY3 DNA repair protein recN (Recombination... 28 8.4
sp|P57368|Y281_BUCAI Hypothetical transport protein BU281 28 8.4
>sp|Q7VDC2|LGT_PROMA Prolipoprotein diacylglyceryl transferase
Length = 303
Score = 32.0 bits (71), Expect = 0.45
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 116 LYFICIDICLMYLLMLDFRSVLRISNGKAACIFFI 220
L+ ICI + L++L L+ R ++++ +G +CI+ I
Sbjct: 200 LWNICIFLILIFLFRLNIRGLMKLPSGALSCIYLI 234
>sp|P17221|FEM1_CAEEL Sex-determining protein fem-1 (Feminization of XX and XO animals
protein 1)
Length = 656
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 258 IHQTHTKPMYKGTI---KKIHAAFPLEIRRTLRKSNINKYIRHMSIHMKY 118
+ Q H P+Y GTI + H F + + + + N+ +R S +KY
Sbjct: 375 LQQKHFAPLYYGTITTLQSFHETFSMSLNDFVNNHHANRNLRVRSSWVKY 424
>sp|P47043|ZAP1_YEAST Zinc-responsive transcriptional regulator ZAP1
Length = 880
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = -3
Query: 258 IHQTHTKPMYKGTIKKIHAAFPLEIRRTLRKSNINKYIRHMSIHMKYNTLSC 103
+H T K Y+ H FP K IRH+ +H KY C
Sbjct: 729 VHLTRGKSEYQCLWHDCHRTFPQR----------QKLIRHLKVHSKYKPYKC 770
>sp|P74374|RECN_SYNY3 DNA repair protein recN (Recombination protein N)
Length = 584
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -1
Query: 305 NLTNSITQEQVRLQHKYTKLTQNPCTKAQ*KKYMLPFHWKFVEHYGNLTLI 153
+LT +I ++ ++Q +Y +LT + AQ ++ + + ++H G LTLI
Sbjct: 326 SLTEAIAYQE-KIQAEYDQLTDGEQSLAQLQESLTKAEQELIKHCGQLTLI 375
>sp|P57368|Y281_BUCAI Hypothetical transport protein BU281
Length = 307
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 187 FQWKGSMYFFYCAFVHGFCVSLVYLCCRRTC 279
FQWKG + + F H F +Y C++ C
Sbjct: 148 FQWKGILALLFALFSHAF----IYSECQKKC 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,355,353
Number of Sequences: 369166
Number of extensions: 648304
Number of successful extensions: 2164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2163
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)