Planaria EST Database

DrC_00169

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00169
         (609 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04974|TVID_SALTI  Vi polysaccharide biosynthesis protein...    33   0.57 
sp|Q8VF76|OL998_MOUSE  Olfactory receptor 998 (Olfactory rec...    33   0.74 
sp|Q890I8|GLGA_LACPL  Glycogen synthase (Starch [bacterial g...    32   1.3  
sp|Q04704|V6B_CVCAE  Protein 6B                                    30   3.7  
sp|P53616|SUN4_YEAST  Septation protein SUN4 precursor (Solu...    30   3.7  
sp|O28029|SYA_ARCFU  Alanyl-tRNA synthetase (Alanine--tRNA l...    30   6.3  

>sp|Q04974|TVID_SALTI Vi polysaccharide biosynthesis protein tviD
          Length = 831

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
 Frame = -1

Query: 273 FNFRFH-KNLIFIMRISNSFVSAICTIFSFYN*PNKSRAFMHNSNYIASSTCIHCTT--W 103
           FNF+ + K +      S+  +  I  I    + P K R F+   N   S+T +H  +  +
Sbjct: 31  FNFQANFKRIYGFTHTSSEALQQIRFILGLIDIPEKVRPFIFRPNVNYSNTDVHSRSDFY 90

Query: 102 NISI-----LMTFPFCLIVSLVFNYIVTHFYKY 19
            I I     +M + FCL +    NY+  HFY++
Sbjct: 91  IIEISSQKKIMAYGFCLQI----NYLTRHFYEF 119

>sp|Q8VF76|OL998_MOUSE Olfactory receptor 998 (Olfactory receptor 175-5)
          Length = 314

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = -1

Query: 222 SFVSAICTIFSFYN*PNKSRAFMHNSNYIASSTCIHCTTWNISILMTFPFCLIVSLVFNY 43
           S+VS + TIF       K +AF   S+++A+ + ++ T + I +  +  F    SL  N 
Sbjct: 217 SYVSILMTIFKIQTADGKQKAFSTCSSHLAAVSILYGTLFFIYVRPSASF----SLNINK 272

Query: 42  IVTHFYKYLVP 10
           +++ FY  ++P
Sbjct: 273 MISLFYTVVIP 283

>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
          Length = 479

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 190 GENCAYCGYKGVAYSHYEYQIFVETEIKNNTKLRWKWTDGKKF 318
           GE+  YCG K +  +H +Y +    +      L   W DG +F
Sbjct: 68  GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDGARF 110

>sp|Q04704|V6B_CVCAE Protein 6B
          Length = 213

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
 Frame = +1

Query: 160 GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIKNNT-KLRWKWTDGKKFPENAIM 336
           G+ +    IEG  C++ GYK  AY+H +Y   + +   +   K      D ++     ++
Sbjct: 62  GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121

Query: 337 GGHDGDKMLFIG-RACVENQILVGS---YRRDTGEV----HIPFKGKEYIVKCC 474
           G    DK L +G R      + +G+   + +D   +    H+    + Y VK C
Sbjct: 122 GATPKDKRLTVGCRTSFSVNLPIGTQIYHDKDMQHLVEGRHLECAHRVYFVKYC 175

>sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Soluble cell wall protein 3)
          Length = 420

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
 Frame = +1

Query: 43  IVKDQTDNQTKWERHENGNIPCGAVYAGGRCYIVRVMHEG---------SRLVGSIIEGE 195
           I  D  D    +E+ E+G IPCG   +G     +  + EG         +   GS  EG 
Sbjct: 149 IYGDLADFSGPYEKFEDGTIPCGQFPSGQGVIPISWLDEGGWSGVENTDTSTGGSCKEGS 208

Query: 196 NCAYCGYKGVAYSHY 240
            C+Y    G++ + +
Sbjct: 209 YCSYACQPGMSKTQW 223

>sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
          Length = 906

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +1

Query: 241 EYQIFVETEIKNNTKLRWKWTD----GKKFPENAIMGGHDGDKMLFIGRACVENQILVGS 408
           E ++    EI  N  ++W+W D     +KF      GG    + + + +   + Q   G+
Sbjct: 647 EIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGDDVQACGGT 706

Query: 409 YRRDTGEV 432
           + R TGE+
Sbjct: 707 HCRSTGEI 714

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,959,700
Number of Sequences: 369166
Number of extensions: 1682748
Number of successful extensions: 4193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4191
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00169

  1. Dr_sW_005_C14
  2. Dr_sW_014_N12
  3. Dr_sW_010_D15
  4. Dr_sW_018_E09
  5. Dr_sW_007_B17
  6. Dr_sW_022_M13
  7. Dr_sW_019_N06
  8. Dr_sW_011_M06
  9. Dr_sW_023_G14
  10. Dr_sW_007_H09
  11. Dr_sW_026_M01
  12. Dr_sW_010_G08
  13. Dr_sW_017_L18
  14. Dr_sW_017_E22
  15. Dr_sW_026_M04
  16. Dr_sW_016_J03
  17. Dr_sW_026_H13
  18. Dr_sW_009_N11
  19. Dr_sW_012_E15
  20. Dr_sW_015_D01
  21. Dr_sW_008_J17
  22. Dr_sW_025_E01
  23. Dr_sW_019_N16
  24. Dr_sW_021_K10
  25. Dr_sW_021_N16
  26. Dr_sW_016_C22
  27. Dr_sW_019_K18
  28. Dr_sW_015_N12
  29. Dr_sW_012_L15
  30. Dr_sW_013_N22
  31. Dr_sW_024_M24
  32. Dr_sW_003_O20
  33. Dr_sW_026_A13
  34. Dr_sW_001_P15
  35. Dr_sW_024_B17
  36. Dr_sW_019_I07
  37. Dr_sW_017_C01
  38. Dr_sW_001_D04
  39. Dr_sW_008_K20
  40. Dr_sW_027_G09
  41. Dr_sW_003_B15
  42. Dr_sW_002_I14
  43. Dr_sW_018_I09
  44. Dr_sW_013_O22
  45. Dr_sW_001_C21
  46. Dr_sW_009_O09
  47. Dr_sW_019_A16
  48. Dr_sW_006_K21
  49. Dr_sW_018_C19
  50. Dr_sW_027_N12
  51. Dr_sW_017_D20
  52. Dr_sW_012_P21