Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_C22
(548 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial g... 32 1.0
sp|Q04704|V6B_CVCAE Protein 6B 30 3.0
sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Solu... 30 3.0
sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA l... 30 5.1
sp|Q6AYM2|TEKT2_RAT Tektin-2 (Testicular tektin) (Tektin-t) 29 6.6
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
Length = 479
Score = 32.0 bits (71), Expect = 1.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 167 GENCAYCGYKGVAYSHYEYQIFVETEIKNNTKLRWKWTDGKKF 295
GE+ YCG K + +H +Y + + L W DG +F
Sbjct: 68 GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDGARF 110
>sp|Q04704|V6B_CVCAE Protein 6B
Length = 213
Score = 30.4 bits (67), Expect = 3.0
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Frame = +2
Query: 137 GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIKNNT-KLRWKWTDGKKFPENAIM 313
G+ + IEG C++ GYK AY+H +Y + + + K D ++ ++
Sbjct: 62 GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121
Query: 314 GGHDGDKMLFIG-RACVENQILVGS---YRRDTGEV----HIPFKGKEYIVKCC 451
G DK L +G R + +G+ + +D + H+ + Y VK C
Sbjct: 122 GATPKDKRLTVGCRTSFSVNLPIGTQIYHDKDMQHLVEGRHLECAHRVYFVKYC 175
>sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Soluble cell wall protein 3)
Length = 420
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Frame = +2
Query: 20 IVKDQTDNQTKWERHENGNIPCGAVYAGGRCYIVRVMHEG---------SRLVGSIIEGE 172
I D D +E+ E+G IPCG +G + + EG + GS EG
Sbjct: 149 IYGDLADFSGPYEKFEDGTIPCGQFPSGQGVIPISWLDEGGWSGVENTDTSTGGSCKEGS 208
Query: 173 NCAYCGYKGVAYSHY 217
C+Y G++ + +
Sbjct: 209 YCSYACQPGMSKTQW 223
>sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 906
Score = 29.6 bits (65), Expect = 5.1
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 218 EYQIFVETEIKNNTKLRWKWTD----GKKFPENAIMGGHDGDKMLFIGRACVENQILVGS 385
E ++ EI N ++W+W D +KF GG + + + + + Q G+
Sbjct: 647 EIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGDDVQACGGT 706
Query: 386 YRRDTGEV 409
+ R TGE+
Sbjct: 707 HCRSTGEI 714
>sp|Q6AYM2|TEKT2_RAT Tektin-2 (Testicular tektin) (Tektin-t)
Length = 430
Score = 29.3 bits (64), Expect = 6.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 2 IRMSDDIVKDQTDNQTKWERHEN 70
IR I++++T+NQT W+ H+N
Sbjct: 38 IRQEARILRNETNNQTVWDEHDN 60
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,122,473
Number of Sequences: 369166
Number of extensions: 1565217
Number of successful extensions: 3957
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3956
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)