Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_M24
(517 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial g... 32 0.89
sp|Q04704|V6B_CVCAE Protein 6B 30 2.6
sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA l... 30 4.4
sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Solu... 28 9.9
sp|Q9KQ47|DAPA_VIBCH Dihydrodipicolinate synthase (DHDPS) 28 9.9
sp|P77206|YAFZ_ECOLI Hypothetical protein yafZ 28 9.9
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
Length = 479
Score = 32.0 bits (71), Expect = 0.89
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 137 GENCAYCGYKGVAYSHYEYQIFVETEIKNNTKLRWKWTDGKKF 265
GE+ YCG K + +H +Y + + L W DG +F
Sbjct: 68 GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDGARF 110
>sp|Q04704|V6B_CVCAE Protein 6B
Length = 213
Score = 30.4 bits (67), Expect = 2.6
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Frame = +2
Query: 107 GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIKNNT-KLRWKWTDGKKFPENAIM 283
G+ + IEG C++ GYK AY+H +Y + + + K D ++ ++
Sbjct: 62 GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121
Query: 284 GGHDGDKMLFIG-RACVENQILVGS---YRRDTGEV----HIPFKGKEYIVKCC 421
G DK L +G R + +G+ + +D + H+ + Y VK C
Sbjct: 122 GATPKDKRLTVGCRTSFSVNLPIGTQIYHDKDMQHLVEGRHLECAHRVYFVKYC 175
>sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 906
Score = 29.6 bits (65), Expect = 4.4
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 188 EYQIFVETEIKNNTKLRWKWTD----GKKFPENAIMGGHDGDKMLFIGRACVENQILVGS 355
E ++ EI N ++W+W D +KF GG + + + + + Q G+
Sbjct: 647 EIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGDDVQACGGT 706
Query: 356 YRRDTGEV 379
+ R TGE+
Sbjct: 707 HCRSTGEI 714
>sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Soluble cell wall protein 3)
Length = 420
Score = 28.5 bits (62), Expect = 9.9
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Frame = +2
Query: 23 WERHENGNIPCGAVYAGGRCYIVRVMHEG---------SRLVGSIIEGENCAYCGYKGVA 175
+E+ E+G IPCG +G + + EG + GS EG C+Y G++
Sbjct: 160 YEKFEDGTIPCGQFPSGQGVIPISWLDEGGWSGVENTDTSTGGSCKEGSYCSYACQPGMS 219
Query: 176 YSHY 187
+ +
Sbjct: 220 KTQW 223
>sp|Q9KQ47|DAPA_VIBCH Dihydrodipicolinate synthase (DHDPS)
Length = 292
Score = 28.5 bits (62), Expect = 9.9
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = -1
Query: 205 HKNLIFIMRISNSFVSAICTIFSFYN*PNKSRAFMHNSNYIASSTRIHCTTWNI 44
H+ + F ++N+ ++ ++ +YN P + F+H N IA T I +N+
Sbjct: 83 HEAVTFSRLLNNTGIAGYLSVTPYYNKPTQEGLFLH-YNAIAQETDIPVILYNV 135
>sp|P77206|YAFZ_ECOLI Hypothetical protein yafZ
Length = 273
Score = 28.5 bits (62), Expect = 9.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 254 GKKFPENAIMGGHDG----DKMLFIGRACVENQILVGSYRRDTGEVHIPFKG 397
GK+ PE ++ HDG + + RA +N ++ G GEV +P KG
Sbjct: 95 GKQVPEIILLNSHDGTSSYQMLPGLFRAVCQNGLVCG---ESFGEVRVPHKG 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,067,795
Number of Sequences: 369166
Number of extensions: 1486037
Number of successful extensions: 3711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3710
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)