Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_C21
(581 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial g... 32 1.1
sp|Q04704|V6B_CVCAE Protein 6B 30 3.3
sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Solu... 30 3.3
sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chai... 30 3.3
sp|P28599|CH10_BACSU 10 kDa chaperonin (Protein Cpn10) (gro... 30 4.4
sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA l... 30 5.7
sp|Q8VF76|OL998_MOUSE Olfactory receptor 998 (Olfactory rec... 29 7.4
sp|P78581|TAN_ASPOR Tannase precursor [Contains: Tannase 33... 29 9.7
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
Length = 479
Score = 32.0 bits (71), Expect = 1.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 162 GENCAYCGYKGVAYSHYEYQIFVETEIKNNTKLRWKWTDGKKF 290
GE+ YCG K + +H +Y + + L W DG +F
Sbjct: 68 GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDGARF 110
>sp|Q04704|V6B_CVCAE Protein 6B
Length = 213
Score = 30.4 bits (67), Expect = 3.3
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Frame = +3
Query: 132 GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIKNNT-KLRWKWTDGKKFPENAIM 308
G+ + IEG C++ GYK AY+H +Y + + + K D ++ ++
Sbjct: 62 GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121
Query: 309 GGHDGDKMLFIG-RACVENQILVGS---YRRDTGEV----HIPFKGKEYIVKCC 446
G DK L +G R + +G+ + +D + H+ + Y VK C
Sbjct: 122 GATPKDKRLTVGCRTSFSVNLPIGTQIYHDKDMQHLVEGRHLECAHRVYFVKYC 175
>sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Soluble cell wall protein 3)
Length = 420
Score = 30.4 bits (67), Expect = 3.3
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +3
Query: 15 IVKDQTDNQTKWERHENGNIPCGAVYAGGRGYI-VRVMHEG---------SRLVGSIIEG 164
I D D +E+ E+G IPCG + G+G I + + EG + GS EG
Sbjct: 149 IYGDLADFSGPYEKFEDGTIPCGQ-FPSGQGVIPISWLDEGGWSGVENTDTSTGGSCKEG 207
Query: 165 ENCAYCGYKGVAYSHY 212
C+Y G++ + +
Sbjct: 208 SYCSYACQPGMSKTQW 223
>sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chain (RNAP alpha subunit)
(Transcriptase alpha chain) (RNA polymerase alpha
subunit)
Length = 347
Score = 30.4 bits (67), Expect = 3.3
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 99 GRGYIVRVMHEG-SRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIKNNTKLRWK-W 272
G+GY+ MHEG S +G I + ++ + VAY+ + ++ ++ N KL + W
Sbjct: 160 GKGYVPADMHEGLSEEIGLI--KLDASFSPVRKVAYTVEQARV---GQMTNYDKLILEVW 214
Query: 273 TDGKKFPENAI 305
TDG PE+AI
Sbjct: 215 TDGSVSPEDAI 225
>sp|P28599|CH10_BACSU 10 kDa chaperonin (Protein Cpn10) (groES protein)
Length = 94
Score = 30.0 bits (66), Expect = 4.4
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 81 GAVYAGGRGYIVRVMHEGSRLVGSIIEGENCAYCGYKG--VAYSHYEYQIFVETEI 242
G + A G G RV+ G R+ + EG+ + Y G V Y EY I E++I
Sbjct: 37 GKIVAAGSG---RVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDI 89
>sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 906
Score = 29.6 bits (65), Expect = 5.7
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 213 EYQIFVETEIKNNTKLRWKWTD----GKKFPENAIMGGHDGDKMLFIGRACVENQILVGS 380
E ++ EI N ++W+W D +KF GG + + + + + Q G+
Sbjct: 647 EIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGDDVQACGGT 706
Query: 381 YRRDTGEV 404
+ R TGE+
Sbjct: 707 HCRSTGEI 714
>sp|Q8VF76|OL998_MOUSE Olfactory receptor 998 (Olfactory receptor 175-5)
Length = 314
Score = 29.3 bits (64), Expect = 7.4
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = -1
Query: 194 SFVSAICTIFSFYN*PNKSRAFMHNSNYIASSTCIHCTTWNISILMTFPFCLIVSLVLNY 15
S+VS + TIF K +AF S+++A+ + ++ T + I + + F L ++ +++
Sbjct: 217 SYVSILMTIFKIQTADGKQKAFSTCSSHLAAVSILYGTLFFIYVRPSASFSLNINKMISL 276
Query: 14 IVT 6
T
Sbjct: 277 FYT 279
>sp|P78581|TAN_ASPOR Tannase precursor [Contains: Tannase 33 kDa subunit; Tannase 30 kDa
subunit]
Length = 588
Score = 28.9 bits (63), Expect = 9.7
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 381 YRRDTG--EVHIPFKGKEYIVKCCDVLCTVDE*SLNGITHEIVI 506
Y DTG E++IP G EY+ K +L + LN +T++ ++
Sbjct: 373 YNSDTGKWELNIPSTGGEYVTKFIQLLNLDNLSDLNNVTYDTLV 416
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,466,337
Number of Sequences: 369166
Number of extensions: 1597269
Number of successful extensions: 4156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4154
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)