Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_C14
(571 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04974|TVID_SALTI Vi polysaccharide biosynthesis protein... 33 0.50
sp|Q8VF76|OL998_MOUSE Olfactory receptor 998 (Olfactory rec... 33 0.65
sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial g... 32 1.1
sp|Q04704|V6B_CVCAE Protein 6B 30 3.2
sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Solu... 30 3.2
sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA l... 30 5.5
>sp|Q04974|TVID_SALTI Vi polysaccharide biosynthesis protein tviD
Length = 831
Score = 33.1 bits (74), Expect = 0.50
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Frame = -2
Query: 273 FNFRFH-KNLIFIMRISNSFVSAICTIFSFYN*PNKSRAFMHNSNYIASSTCIHCTT--W 103
FNF+ + K + S+ + I I + P K R F+ N S+T +H + +
Sbjct: 31 FNFQANFKRIYGFTHTSSEALQQIRFILGLIDIPEKVRPFIFRPNVNYSNTDVHSRSDFY 90
Query: 102 NISI-----LMTFPFCLIVSLVFNYIVTHFYKY 19
I I +M + FCL + NY+ HFY++
Sbjct: 91 IIEISSQKKIMAYGFCLQI----NYLTRHFYEF 119
>sp|Q8VF76|OL998_MOUSE Olfactory receptor 998 (Olfactory receptor 175-5)
Length = 314
Score = 32.7 bits (73), Expect = 0.65
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = -2
Query: 222 SFVSAICTIFSFYN*PNKSRAFMHNSNYIASSTCIHCTTWNISILMTFPFCLIVSLVFNY 43
S+VS + TIF K +AF S+++A+ + ++ T + I + + F SL N
Sbjct: 217 SYVSILMTIFKIQTADGKQKAFSTCSSHLAAVSILYGTLFFIYVRPSASF----SLNINK 272
Query: 42 IVTHFYKYLVP 10
+++ FY ++P
Sbjct: 273 MISLFYTVVIP 283
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
Length = 479
Score = 32.0 bits (71), Expect = 1.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 190 GENCAYCGYKGVAYSHYEYQIFVETEIKNNTKLRWKWTDGKKF 318
GE+ YCG K + +H +Y + + L W DG +F
Sbjct: 68 GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDGARF 110
>sp|Q04704|V6B_CVCAE Protein 6B
Length = 213
Score = 30.4 bits (67), Expect = 3.2
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Frame = +1
Query: 160 GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIKNNT-KLRWKWTDGKKFPENAIM 336
G+ + IEG C++ GYK AY+H +Y + + + K D ++ ++
Sbjct: 62 GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121
Query: 337 GGHDGDKMLFIG-RACVENQILVGS---YRRDTGEV----HIPFKGKEYIVKCC 474
G DK L +G R + +G+ + +D + H+ + Y VK C
Sbjct: 122 GATPKDKRLTVGCRTSFSVNLPIGTQIYHDKDMQHLVEGRHLECAHRVYFVKYC 175
>sp|P53616|SUN4_YEAST Septation protein SUN4 precursor (Soluble cell wall protein 3)
Length = 420
Score = 30.4 bits (67), Expect = 3.2
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Frame = +1
Query: 43 IVKDQTDNQTKWERHENGNIPCGAVYAGGRCYIVRVMHEG---------SRLVGSIIEGE 195
I D D +E+ E+G IPCG +G + + EG + GS EG
Sbjct: 149 IYGDLADFSGPYEKFEDGTIPCGQFPSGQGVIPISWLDEGGWSGVENTDTSTGGSCKEGS 208
Query: 196 NCAYCGYKGVAYSHY 240
C+Y G++ + +
Sbjct: 209 YCSYACQPGMSKTQW 223
>sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 906
Score = 29.6 bits (65), Expect = 5.5
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +1
Query: 241 EYQIFVETEIKNNTKLRWKWTD----GKKFPENAIMGGHDGDKMLFIGRACVENQILVGS 408
E ++ EI N ++W+W D +KF GG + + + + + Q G+
Sbjct: 647 EIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGDDVQACGGT 706
Query: 409 YRRDTGEV 432
+ R TGE+
Sbjct: 707 HCRSTGEI 714
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,845,907
Number of Sequences: 369166
Number of extensions: 1634330
Number of successful extensions: 4104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4103
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)