Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_015_N12 (415 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial g... 32 0.51 sp|Q04704|V6B_CVCAE Protein 6B 30 1.5 sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA l... 30 2.5 sp|P77206|YAFZ_ECOLI Hypothetical protein yafZ 28 5.6 sp|P41815|BAP3_YEAST Valine amino-acid permease (Branched-c... 28 7.3 sp|P52132|YFJQ_ECOLI Hypothetical protein yfjQ 28 7.3 sp|P35588|HYPB_HYPLI Hypodermin B precursor (HB) 28 7.3 sp|P19828|ANGR_VIBAN Protein angR 28 9.6 sp|Q46266|PFL_CLOPA Formate acetyltransferase (Pyruvate for... 28 9.6
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase) Length = 479 Score = 32.0 bits (71), Expect = 0.51 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = +1 Query: 34 GENCAYCGYKGVAYSHYEYQIFVETEIKNNTKLRWKWTDGKKF 162 GE+ YCG K + +H +Y + + L W DG +F Sbjct: 68 GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDGARF 110
>sp|Q04704|V6B_CVCAE Protein 6B Length = 213 Score = 30.4 bits (67), Expect = 1.5 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Frame = +1 Query: 4 GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIKNNT-KLRWKWTDGKKFPENAIM 180 G+ + IEG C++ GYK AY+H +Y + + + K D ++ ++ Sbjct: 62 GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121 Query: 181 GGHDGDKMLFIG-RACVENQILVGS---YRRDTGEV----HIPFKGKEYIVKCC 318 G DK L +G R + +G+ + +D + H+ + Y VK C Sbjct: 122 GATPKDKRLTVGCRTSFSVNLPIGTQIYHDKDMQHLVEGRHLECAHRVYFVKYC 175
>sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) Length = 906 Score = 29.6 bits (65), Expect = 2.5 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = +1 Query: 85 EYQIFVETEIKNNTKLRWKWTD----GKKFPENAIMGGHDGDKMLFIGRACVENQILVGS 252 E ++ EI N ++W+W D +KF GG + + + + + Q G+ Sbjct: 647 EIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGDDVQACGGT 706 Query: 253 YRRDTGEV 276 + R TGE+ Sbjct: 707 HCRSTGEI 714
>sp|P77206|YAFZ_ECOLI Hypothetical protein yafZ Length = 273 Score = 28.5 bits (62), Expect = 5.6 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 151 GKKFPENAIMGGHDG----DKMLFIGRACVENQILVGSYRRDTGEVHIPFKG 294 GK+ PE ++ HDG + + RA +N ++ G GEV +P KG Sbjct: 95 GKQVPEIILLNSHDGTSSYQMLPGLFRAVCQNGLVCG---ESFGEVRVPHKG 143
>sp|P41815|BAP3_YEAST Valine amino-acid permease (Branched-chain amino-acid permease 3) Length = 604 Score = 28.1 bits (61), Expect = 7.3 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -2 Query: 372 DFMSYSM**LFINGAQNITAFHYVFFALEWYMHFTGISSVGSN*NLIFNTC 220 + ++ SM + N N F +F+ ++HF G+ + G IFN+C Sbjct: 187 ELITSSMTVKYWNDTINADVFIVIFYVFLLFIHFFGVKAYGET-EFIFNSC 236
>sp|P52132|YFJQ_ECOLI Hypothetical protein yfjQ Length = 273 Score = 28.1 bits (61), Expect = 7.3 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 151 GKKFPENAIMGGHDG----DKMLFIGRACVENQILVGSYRRDTGEVHIPFKG 294 GK+ PE ++ HDG + + RA +N ++ G GEV +P KG Sbjct: 95 GKQVPEIILLNSHDGTSSYQMLPGMFRAVCQNGLVCG---ESFGEVRVPHKG 143
>sp|P35588|HYPB_HYPLI Hypodermin B precursor (HB) Length = 256 Score = 28.1 bits (61), Expect = 7.3 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 Query: 4 GSRLVGSIIEGENCAYCGYKGV 69 G LVG + GE CAY G+ GV Sbjct: 217 GEALVGVVSWGEGCAYPGFPGV 238
>sp|P19828|ANGR_VIBAN Protein angR Length = 1048 Score = 27.7 bits (60), Expect = 9.6 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +1 Query: 49 YCGYKGVAYSHYEYQIFVETEIKNNTKLRWKWTDGKKFPENAIMGGHDGDKML-FIGRAC 225 + G G+A +++ ++ T+ ++ DG + MG + D L F+GR Sbjct: 798 WIGGDGIALGYFDDEL--------KTQAQFLHIDGHAWYRTGDMGCYWPDGTLEFLGRR- 848 Query: 226 VENQILVGSYRRDTGEVHI 282 + Q+ VG YR + GE+ + Sbjct: 849 -DKQVKVGGYRIELGEIEV 866
>sp|Q46266|PFL_CLOPA Formate acetyltransferase (Pyruvate formate-lyase) Length = 740 Score = 27.7 bits (60), Expect = 9.6 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = +1 Query: 223 CVENQILVGSYRRDTGEVHIPFKGKEYIVKCC 318 C E IL S + + ++ P G +Y + CC Sbjct: 375 CAEMSILTDSIQYENDDIMRPIYGDDYAIACC 406
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,584,145 Number of Sequences: 369166 Number of extensions: 1099758 Number of successful extensions: 2249 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2229 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2249 length of database: 68,354,980 effective HSP length: 99 effective length of database: 50,066,215 effective search space used: 1902516170 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)