Planarian EST Database


Dr_sW_015_N12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_015_N12
         (415 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q890I8|GLGA_LACPL  Glycogen synthase (Starch [bacterial g...    32   0.51 
sp|Q04704|V6B_CVCAE  Protein 6B                                    30   1.5  
sp|O28029|SYA_ARCFU  Alanyl-tRNA synthetase (Alanine--tRNA l...    30   2.5  
sp|P77206|YAFZ_ECOLI  Hypothetical protein yafZ                    28   5.6  
sp|P41815|BAP3_YEAST  Valine amino-acid permease (Branched-c...    28   7.3  
sp|P52132|YFJQ_ECOLI  Hypothetical protein yfjQ                    28   7.3  
sp|P35588|HYPB_HYPLI  Hypodermin B precursor (HB)                  28   7.3  
sp|P19828|ANGR_VIBAN  Protein angR                                 28   9.6  
sp|Q46266|PFL_CLOPA  Formate acetyltransferase (Pyruvate for...    28   9.6  
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
          Length = 479

 Score = 32.0 bits (71), Expect = 0.51
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 34  GENCAYCGYKGVAYSHYEYQIFVETEIKNNTKLRWKWTDGKKF 162
           GE+  YCG K +  +H +Y +    +      L   W DG +F
Sbjct: 68  GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDGARF 110
>sp|Q04704|V6B_CVCAE Protein 6B
          Length = 213

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
 Frame = +1

Query: 4   GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIKNNT-KLRWKWTDGKKFPENAIM 180
           G+ +    IEG  C++ GYK  AY+H +Y   + +   +   K      D ++     ++
Sbjct: 62  GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121

Query: 181 GGHDGDKMLFIG-RACVENQILVGS---YRRDTGEV----HIPFKGKEYIVKCC 318
           G    DK L +G R      + +G+   + +D   +    H+    + Y VK C
Sbjct: 122 GATPKDKRLTVGCRTSFSVNLPIGTQIYHDKDMQHLVEGRHLECAHRVYFVKYC 175
>sp|O28029|SYA_ARCFU Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
          Length = 906

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +1

Query: 85  EYQIFVETEIKNNTKLRWKWTD----GKKFPENAIMGGHDGDKMLFIGRACVENQILVGS 252
           E ++    EI  N  ++W+W D     +KF      GG    + + + +   + Q   G+
Sbjct: 647 EIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGDDVQACGGT 706

Query: 253 YRRDTGEV 276
           + R TGE+
Sbjct: 707 HCRSTGEI 714
>sp|P77206|YAFZ_ECOLI Hypothetical protein yafZ
          Length = 273

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 151 GKKFPENAIMGGHDG----DKMLFIGRACVENQILVGSYRRDTGEVHIPFKG 294
           GK+ PE  ++  HDG      +  + RA  +N ++ G      GEV +P KG
Sbjct: 95  GKQVPEIILLNSHDGTSSYQMLPGLFRAVCQNGLVCG---ESFGEVRVPHKG 143
>sp|P41815|BAP3_YEAST Valine amino-acid permease (Branched-chain amino-acid permease 3)
          Length = 604

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 372 DFMSYSM**LFINGAQNITAFHYVFFALEWYMHFTGISSVGSN*NLIFNTC 220
           + ++ SM   + N   N   F  +F+    ++HF G+ + G     IFN+C
Sbjct: 187 ELITSSMTVKYWNDTINADVFIVIFYVFLLFIHFFGVKAYGET-EFIFNSC 236
>sp|P52132|YFJQ_ECOLI Hypothetical protein yfjQ
          Length = 273

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 151 GKKFPENAIMGGHDG----DKMLFIGRACVENQILVGSYRRDTGEVHIPFKG 294
           GK+ PE  ++  HDG      +  + RA  +N ++ G      GEV +P KG
Sbjct: 95  GKQVPEIILLNSHDGTSSYQMLPGMFRAVCQNGLVCG---ESFGEVRVPHKG 143
>sp|P35588|HYPB_HYPLI Hypodermin B precursor (HB)
          Length = 256

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 4   GSRLVGSIIEGENCAYCGYKGV 69
           G  LVG +  GE CAY G+ GV
Sbjct: 217 GEALVGVVSWGEGCAYPGFPGV 238
>sp|P19828|ANGR_VIBAN Protein angR
          Length = 1048

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 49   YCGYKGVAYSHYEYQIFVETEIKNNTKLRWKWTDGKKFPENAIMGGHDGDKML-FIGRAC 225
            + G  G+A  +++ ++         T+ ++   DG  +     MG +  D  L F+GR  
Sbjct: 798  WIGGDGIALGYFDDEL--------KTQAQFLHIDGHAWYRTGDMGCYWPDGTLEFLGRR- 848

Query: 226  VENQILVGSYRRDTGEVHI 282
             + Q+ VG YR + GE+ +
Sbjct: 849  -DKQVKVGGYRIELGEIEV 866
>sp|Q46266|PFL_CLOPA Formate acetyltransferase (Pyruvate formate-lyase)
          Length = 740

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 223 CVENQILVGSYRRDTGEVHIPFKGKEYIVKCC 318
           C E  IL  S + +  ++  P  G +Y + CC
Sbjct: 375 CAEMSILTDSIQYENDDIMRPIYGDDYAIACC 406
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,584,145
Number of Sequences: 369166
Number of extensions: 1099758
Number of successful extensions: 2249
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2249
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)