Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_N12
(282 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P78581|TAN_ASPOR Tannase precursor [Contains: Tannase 33... 29 3.8
sp|P77206|YAFZ_ECOLI Hypothetical protein yafZ 28 5.0
sp|O75161|NPH4_HUMAN Nephrocystin-4 (Nephroretinin) 28 6.5
sp|P52132|YFJQ_ECOLI Hypothetical protein yfjQ 28 6.5
sp|Q9H7T0|CN161_HUMAN Hypothetical protein C14orf161 28 8.6
sp|P41815|BAP3_YEAST Valine amino-acid permease (Branched-c... 28 8.6
sp|Q46266|PFL_CLOPA Formate acetyltransferase (Pyruvate for... 28 8.6
>sp|P78581|TAN_ASPOR Tannase precursor [Contains: Tannase 33 kDa subunit; Tannase 30 kDa
subunit]
Length = 588
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 120 YRRDTG--EVHIPFKGKEYIVKCCDVLCTVDE*SLNGITHEIVI 245
Y DTG E++IP G EY+ K +L + LN +T++ ++
Sbjct: 373 YNSDTGKWELNIPSTGGEYVTKFIQLLNLDNLSDLNNVTYDTLV 416
>sp|P77206|YAFZ_ECOLI Hypothetical protein yafZ
Length = 273
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 18 GKKFPENAIMGGHDG----DKMLFIGRACVENQILVGSYRRDTGEVHIPFKG 161
GK+ PE ++ HDG + + RA +N ++ G GEV +P KG
Sbjct: 95 GKQVPEIILLNSHDGTSSYQMLPGLFRAVCQNGLVCG---ESFGEVRVPHKG 143
>sp|O75161|NPH4_HUMAN Nephrocystin-4 (Nephroretinin)
Length = 1426
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -1
Query: 72 TFYLHHDHP-LLHFQEISFHL 13
TF+LH DHP LL F+E SF +
Sbjct: 1361 TFHLHSDHPELLRFREDSFQV 1381
>sp|P52132|YFJQ_ECOLI Hypothetical protein yfjQ
Length = 273
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 18 GKKFPENAIMGGHDG----DKMLFIGRACVENQILVGSYRRDTGEVHIPFKG 161
GK+ PE ++ HDG + + RA +N ++ G GEV +P KG
Sbjct: 95 GKQVPEIILLNSHDGTSSYQMLPGMFRAVCQNGLVCG---ESFGEVRVPHKG 143
>sp|Q9H7T0|CN161_HUMAN Hypothetical protein C14orf161
Length = 638
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 226 IPFSDYSSTVHRTSQHFTMY-SLPLN 152
IPF D+ S VH+ SQ F + +LP+N
Sbjct: 365 IPFEDWISGVHKDSQGFNLIKTLPIN 390
>sp|P41815|BAP3_YEAST Valine amino-acid permease (Branched-chain amino-acid permease 3)
Length = 604
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 203 NGAQNITAFHYVFFALEWYMHFTGISSVGSN*NLIFNTC 87
N N F +F+ ++HF G+ + G IFN+C
Sbjct: 199 NDTINADVFIVIFYVFLLFIHFFGVKAYGET-EFIFNSC 236
>sp|Q46266|PFL_CLOPA Formate acetyltransferase (Pyruvate formate-lyase)
Length = 740
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 90 CVENQILVGSYRRDTGEVHIPFKGKEYIVKCC 185
C E IL S + + ++ P G +Y + CC
Sbjct: 375 CAEMSILTDSIQYENDDIMRPIYGDDYAIACC 406
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,081,953
Number of Sequences: 369166
Number of extensions: 687711
Number of successful extensions: 1301
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)