Planarian EST Database

DrC_00073

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00073 TAAATTCTAAATGACAATTAATTATTTTCGAATTTATTCGCCACTCTTGAACTTATCGAG ATGTTTTGCAGCCAACGCAGCTCCATTGCAAGGTTCCGCGCATACTTTAGCTGTTAAAAA GAAAATTGATGAAACTCGTAATAAGGCATTATTGGGTGGTGGTATAAAGAGAATTGAAGC TCAACACAGTAAAGGAAAATTAACAGCTCGAGAAAGAATTCATTTATTGTGCGATGAAAA TGAGTTTGTTGAATGGGATGCATTTATGGAGCATGACTGTTCAGATTTTGGAATGGAAGC TAATAGATTTCCCGGTGACAGTGTTGTGACTGGTTATGGTAAAATACATGGCAGACCAGC GTTTATTTTTAGTCAAGACTTTACAGTTTTTGGTGGAAGTCTTAGTATGGCTCATGCCAA AAAAATATGTAAAGTTATGGATCAGGCTATGCTAGTTGGAGCACCGGTAATTTGGACTTA ATGATTCTGGGGGTGCTTCGTATTCAAGAGGGTGTCGCATCACTTTGCAGGATATGCTGA AATATTTCAACGTAATGTAATGGCTTTCTGGTGTCATTCCCGCAAATATCTTTAATTATG GGGGCCCTTGTGCGGGGGGGTGCTGTTTATTTCACCCTGCATTAACCCGATTTTACTTTT ATGGGTGAAAGATTCGAGTTATCTTTTTATTACTGGTCCTGATGTTGTGAAATCTGTAAC TAATGAAGATGTGACTCAAGAAGAATTGGGTGGTGCTAAGACACATACTACAATTTCTGG AGTCGCACATAAAGCGTTTGAGAATGATGTTGATGCTTTAATGGAATTAAGAGAATTTTT TACATTTCTTCCTCAAAGTAATCGTTTACATTCTCCAATTCGTCATAGTCATGATCCACC CGATAGATTGGTACCTTCCTTAGATACAATTGTTCCATTAGAGTCTACTGCTGCTTATAA TATGCTAGATGTCATATATGGCGTTGTAGATGAAAGTGAATTTTTTGAAATAATGCCTAC ATATGCCAAAAATATTATAATTGGTTTTGGCCGTATGCATGGACGAACCGTGGGAATTAT AGGAAATCAACCTAAAGTTGCAGCTGGGTGTTTGGATATAAATGCATCGGTTAAAGGAGC ACGATTTGTTCGGTTTTGTGACGCTTTTAATATCCCGTTGCTTACATTTGTTGATGTACC TGGATTTTTACCGGGAACTGTTCAAGAATATGGTGGAATAATTCGTCACGGAGCAAAATT ACTTTATGCATATGCAGAAGCAACGGTACCAAAAATAACAATTATAACACGTAAAGCTTA TGGTGGTGCATATGATGTAATGAGTTCAAAGCATTTACGAGGAGACATTAATTATGCCTG GCCAACAGCGGAGGTGGCTGTTATGGGCGCAAAAGGTGCGGTTCAAATTATCTTCAGAGG ATCTGGCTCAGAACAACTCACTAAGGAAGCCGAATATGTTGATAAGTTTGCAAATCCTTT TCCCGCTGCTGTTCGGGGATTTGTTGATGATATCATTGAACCAAGAAGGACTAGAGCAAA AATATGTCAAGATTTGGATTTATTACAACATAAGCAACTTATAAATCCTTGGAAAAAACA TGGAAATATTCCTTTATGAATTGATAAATTATAAAATAGTTCATTTATATACTCATAGTA ATATGATTTTGTTATGATTAATAAATATATCAATTAGTTTGTACCCAA

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00073
         (1728 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P79384|PCCB_PIG  Propionyl-CoA carboxylase beta chain, mi...   708   0.0  
sp|P05166|PCCB_HUMAN  Propionyl-CoA carboxylase beta chain, ...   705   0.0  
sp|Q99MN9|PCCB_MOUSE  Propionyl-CoA carboxylase beta chain, ...   704   0.0  
sp|P07633|PCCB_RAT  Propionyl-CoA carboxylase beta chain, mi...   696   0.0  
sp|P53003|PCCB_SACER  Propionyl-CoA carboxylase beta chain (...   454   e-127
sp|P96885|PCC5_MYCTU  Probable propionyl-CoA carboxylase bet...   436   e-121
sp|P53002|PCCB_MYCLE  Probable propionyl-CoA carboxylase bet...   434   e-121
sp|Q8GBW6|12S_PROFR  Methylmalonyl-CoA carboxyltransferase 1...   415   e-115
sp|P54541|PCCB_BACSU  Putative propionyl-CoA carboxylase bet...   408   e-113
sp|Q06101|PCCB_RHOER  Propionyl-CoA carboxylase beta chain (...   243   2e-63

>sp|P79384|PCCB_PIG Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
            beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
            subunit)
          Length = 539

 Score =  708 bits (1827), Expect = 0.0
 Identities = 357/512 (69%), Positives = 421/512 (82%), Gaps = 2/512 (0%)
 Frame = +2

Query: 107  LAVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSD 286
            ++V ++I+  R  ALLGGG +RI++QH +GKLTARERI LL D   F+E D F+EH C+D
Sbjct: 33   VSVNERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFIESDMFVEHRCAD 92

Query: 287  FGMEA--NRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVG 460
            FGM A  N+FPGDSVVTG G+I+GR  ++FSQDFTVFGGSLS AHA+KICK+MDQAM VG
Sbjct: 93   FGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVG 152

Query: 461  APVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPC 640
            APVI      G  + + V    AGYA+IF RNV A     +  L + GP  GG ++ SP 
Sbjct: 153  APVIGLNDSGGARIQEGVES-LAGYADIFLRNVSASGVIPQISL-IMGPCAGGAVY-SPA 209

Query: 641  INPILLLWVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDAL 820
            +     + VKD+SYLFITGPDVVKSVTNEDVTQEELGGA+THTT+SGVAH+AF+NDVDAL
Sbjct: 210  LTDFTFM-VKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFDNDVDAL 268

Query: 821  MELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESE 1000
              LREFF +LP SN+  +PIR  HDP DRLVP LDT+VPLEST AY+M+D+IY +VDE +
Sbjct: 269  CNLREFFNYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDIIYSIVDERD 328

Query: 1001 FFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPL 1180
            FFEIMP YAKNII+GF RM+GRTVGI+GNQPKVA+GCLDIN+SVKGARFVRFCDAFNIPL
Sbjct: 329  FFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPL 388

Query: 1181 LTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLR 1360
            +TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKIT+ITRKAYGGAYDVMSSKHL 
Sbjct: 389  ITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLC 448

Query: 1361 GDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIE 1540
            GD NYAWPTAE+AVMGAKGAV+IIF+G  + +   +AEY++KFANPFPAAVRGFVDDII+
Sbjct: 449  GDTNYAWPTAEIAVMGAKGAVEIIFKGHENVE-AAQAEYIEKFANPFPAAVRGFVDDIIQ 507

Query: 1541 PRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 1636
            P  TRA+IC DLD+L  K++  PW+KH NIPL
Sbjct: 508  PSSTRARICCDLDVLASKKVQRPWRKHANIPL 539

>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
            beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
            subunit)
          Length = 539

 Score =  705 bits (1819), Expect = 0.0
 Identities = 358/511 (70%), Positives = 419/511 (81%), Gaps = 2/511 (0%)
 Frame = +2

Query: 110  AVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSDF 289
            +V ++I+  R  ALLGGG +RI+AQH +GKLTARERI LL D   FVE D F+EH C+DF
Sbjct: 34   SVNERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADF 93

Query: 290  GMEA--NRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVGA 463
            GM A  N+FPGDSVVTG G+I+GR  ++FSQDFTVFGGSLS AHA+KICK+MDQA+ VGA
Sbjct: 94   GMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGA 153

Query: 464  PVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPCI 643
            PVI      G  + + V    AGYA+IF RNV A     +  L + GP  GG ++ SP +
Sbjct: 154  PVIGLNDSGGARIQEGVES-LAGYADIFLRNVTASGVIPQISL-IMGPCAGGAVY-SPAL 210

Query: 644  NPILLLWVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALM 823
                 + VKD+SYLFITGPDVVKSVTNEDVTQEELGGAKTHTT+SGVAH+AFENDVDAL 
Sbjct: 211  TDFTFM-VKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALC 269

Query: 824  ELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESEF 1003
             LR+FF +LP S++  + +R  HDP DRLVP LDTIVPLEST AYNM+D+I+ VVDE EF
Sbjct: 270  NLRDFFNYLPLSSQDPASVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDEREF 329

Query: 1004 FEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLL 1183
            FEIMP YAKNII+GF RM+GRTVGI+GNQPKVA+GCLDIN+SVKGARFVRFCDAFNIPL+
Sbjct: 330  FEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLI 389

Query: 1184 TFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRG 1363
            TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPK+T+ITRKAYGGAYDVMSSKHL G
Sbjct: 390  TFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCG 449

Query: 1364 DINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEP 1543
            D NYAWPTAE+AVMGAKGAV+IIF+G  + +   +AEY++KFANPFPAAVRGFVDDII+P
Sbjct: 450  DTNYAWPTAEIAVMGAKGAVEIIFKGHENVE-AAQAEYIEKFANPFPAAVRGFVDDIIQP 508

Query: 1544 RRTRAKICQDLDLLQHKQLINPWKKHGNIPL 1636
              TRA+IC DLD+L  K++  PW+KH NIPL
Sbjct: 509  SSTRARICCDLDVLASKKVQRPWRKHANIPL 539

>sp|Q99MN9|PCCB_MOUSE Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
            beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
            subunit)
          Length = 541

 Score =  704 bits (1817), Expect = 0.0
 Identities = 356/512 (69%), Positives = 421/512 (82%), Gaps = 2/512 (0%)
 Frame = +2

Query: 107  LAVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSD 286
            ++VK++ID  R+ ALLGGG +RI+AQH +GKLTARERI LL D   F+E D F+EH C+D
Sbjct: 35   VSVKERIDNKRHAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFMESDMFVEHRCAD 94

Query: 287  FGMEA--NRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVG 460
            FGM A  N+FPGDSVVTG G+I+GR  ++FSQDFTVFGGSLS AHA+KICK+MDQA+ VG
Sbjct: 95   FGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVG 154

Query: 461  APVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPC 640
            APVI      G  + + V    AGYA+IF RNV A     +  L + GP  GG ++ SP 
Sbjct: 155  APVIGLNDSGGARIQEGVES-LAGYADIFLRNVTASGVIPQISL-IMGPCAGGAVY-SPA 211

Query: 641  INPILLLWVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDAL 820
            +     + VKD+SYLFITGP+VVKSVTNEDVTQE+LGGAKTHTT+SGVAH+AF+NDVDAL
Sbjct: 212  LTDFTFM-VKDTSYLFITGPEVVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDAL 270

Query: 821  MELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESE 1000
              LREFF FLP S++  +PIR  HDP DRLVP LDT+VPLES+ AYNMLD+I+ V+DE E
Sbjct: 271  CNLREFFNFLPLSSQDPAPIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVIDERE 330

Query: 1001 FFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPL 1180
            FFEIMP+YA NI++GF RM+GRTVGI+GNQP VA+GCLDIN+SVKGARFVRFCDAFNIPL
Sbjct: 331  FFEIMPSYALNIVVGFARMNGRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFNIPL 390

Query: 1181 LTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLR 1360
            +TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKIT+ITRKAYGGAYDVMSSKHL 
Sbjct: 391  ITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLL 450

Query: 1361 GDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIE 1540
            GD NYAWPTAE+AVMGAKGAV+IIF+G    +   +AEYV+KFANPFPAAVRGFVDDII+
Sbjct: 451  GDTNYAWPTAEIAVMGAKGAVEIIFKGHQDVE-AAQAEYVEKFANPFPAAVRGFVDDIIQ 509

Query: 1541 PRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 1636
            P  TRA+IC DL++L  K++  PW+KH NIPL
Sbjct: 510  PSSTRARICCDLEVLASKKVHRPWRKHANIPL 541

>sp|P07633|PCCB_RAT Propionyl-CoA carboxylase beta chain, mitochondrial precursor (PCCase
            beta subunit) (Propanoyl-CoA:carbon dioxide ligase beta
            subunit)
          Length = 541

 Score =  696 bits (1796), Expect = 0.0
 Identities = 352/512 (68%), Positives = 417/512 (81%), Gaps = 2/512 (0%)
 Frame = +2

Query: 107  LAVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSD 286
            ++V ++I+  R+ ALLGGG +RI+AQH +GKLTARERI LL D   F+E D F+EH C+D
Sbjct: 35   VSVNERIENKRHAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFLESDMFVEHRCAD 94

Query: 287  FGM--EANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVG 460
            FGM  E N+FPGDSVVTG G+I+GR  ++FSQDFTVFGGSLS AHA+KICK+MDQA+ VG
Sbjct: 95   FGMAAEKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVG 154

Query: 461  APVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPC 640
            APVI      G  + + V    AGYA+IF RNV A     +  L + GP  GG ++ SP 
Sbjct: 155  APVIGLNDSGGARIQEGVES-LAGYADIFLRNVTASGVIPQISL-IMGPCAGGAVY-SPA 211

Query: 641  INPILLLWVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDAL 820
            +     + VKD+SYLFITGP+ VKSVTNEDVTQE+LGGAKTHTT+SGVAH+AF+NDVDAL
Sbjct: 212  LTDFTFM-VKDTSYLFITGPEFVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDAL 270

Query: 821  MELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVDESE 1000
              LREF  FLP SN+  + IR  HDP DRLVP LDT+VPLES+ AYNMLD+I+ V+DE E
Sbjct: 271  CNLREFLNFLPLSNQDPASIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVIDERE 330

Query: 1001 FFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPL 1180
            FFEIMP YAKNI+IGF RM+GRTVGI+GNQP VA+GCLDIN+SVKGARFVRFCDAF+IPL
Sbjct: 331  FFEIMPNYAKNIVIGFARMNGRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFSIPL 390

Query: 1181 LTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLR 1360
            +TFVDVPGFLPGT QEYGGIIRHGAKLLYA+AEATVPKIT+ITRKAYGGAYDVMSSKHL 
Sbjct: 391  ITFVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLL 450

Query: 1361 GDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIE 1540
            GD NYAWPTAE+AVMGAKGAV+IIF+G    +   +AEYV+KFANPFPAAVRGFVDDII+
Sbjct: 451  GDTNYAWPTAEIAVMGAKGAVEIIFKGHEDVE-AAQAEYVEKFANPFPAAVRGFVDDIIQ 509

Query: 1541 PRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 1636
            P  TRA+IC DL++L  K++  PW+KH N+PL
Sbjct: 510  PSSTRARICCDLEVLASKKVHRPWRKHANVPL 541

>sp|P53003|PCCB_SACER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
            dioxide ligase)
          Length = 546

 Score =  454 bits (1168), Expect = e-127
 Identities = 257/532 (48%), Positives = 334/532 (62%), Gaps = 20/532 (3%)
 Frame = +2

Query: 101  HTLAVKKKIDETRN-KALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHD 277
            HT A K      RN +A+  G  + +  QH+KGK TARERI +L DE  FVE D    H 
Sbjct: 19   HTTAGKLADLYRRNHEAVHAGSERAVAKQHAKGKRTARERIDMLLDEGSFVELDEHARHR 78

Query: 278  CSDFGMEANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLV 457
             ++FGM+A+R  GD VVTG+G + GR   +FSQDFTVFGGSL     +KI KVMD AM  
Sbjct: 79   STNFGMDADRPYGDGVVTGWGTVDGRRVCVFSQDFTVFGGSLGEVFGEKIVKVMDLAMKT 138

Query: 458  GAPVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISP 637
            G P++      G  + + V+     YAEIF+RN  A     +  L + GP  GG ++ SP
Sbjct: 139  GCPLVGINDSGGARIQEGVAA-LGLYAEIFKRNTHASGVIPQISL-IMGPCAGGAVY-SP 195

Query: 638  CINPILLLWVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDA 817
             I    ++ V  +S++FITGPDV+K+VT EDV+ E+LGGA+TH   SG AH    ++ DA
Sbjct: 196  AITDFTVM-VDQTSHMFITGPDVIKTVTGEDVSFEDLGGARTHNERSGNAHYLATDEDDA 254

Query: 818  LMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPS--------LDTIVPLESTAAYNMLDV 973
            +  ++E  +FLP +N   SP+    +  +  V          LD +VP      Y+M +V
Sbjct: 255  ISYVKELLSFLPSNNLSSSPVFPGAEVEEGSVADGVGDADLELDALVPDSPNQPYDMREV 314

Query: 974  IYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVR 1153
            I  +VDE EF E+   +A N++ GFGR+ G +VG++ NQP   AG LDI+AS K ARFVR
Sbjct: 315  ITRLVDEGEFLEVSALFAPNMLCGFGRIEGASVGVVANQPMQLAGTLDIDASEKAARFVR 374

Query: 1154 FCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAY 1333
            FCDAFNIP+LT VDVPGFLPGT Q++  IIR GAKLLYAYAEATVP +T+ITRKAYGGAY
Sbjct: 375  FCDAFNIPVLTLVDVPGFLPGTGQDWNAIIRRGAKLLYAYAEATVPLVTVITRKAYGGAY 434

Query: 1334 DVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSEQLTK-----------EAEYV 1480
            DVM SKHL  DIN AWPTA++AVMGA+GA  I++R   +E   +           + EY 
Sbjct: 435  DVMGSKHLGADINLAWPTAQIAVMGAQGAANILYRRQLAEAAERGEDVEALRARLQQEYE 494

Query: 1481 DKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 1636
            D   NP+ AA RG+VD +I P  TR  + + L +L  K+   P KKHGNIPL
Sbjct: 495  DTLCNPYVAAERGYVDSVIPPSHTRGHVARALRMLADKREALPAKKHGNIPL 546

>sp|P96885|PCC5_MYCTU Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
            (Propanoyl-CoA:carbon dioxide ligase)
          Length = 548

 Score =  436 bits (1120), Expect = e-121
 Identities = 254/531 (47%), Positives = 329/531 (61%), Gaps = 19/531 (3%)
 Frame = +2

Query: 101  HTLAVK-KKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHD 277
            HT A K  ++ + R ++L   G   +E  H+KGKLTARERI+ L DE+ FVE DA  +H 
Sbjct: 23   HTTAGKLAELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHR 82

Query: 278  CSDFGMEANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLV 457
             ++F +   R  GD VVTGYG I GR   IFSQD TVFGGSL   + +KI KV + A+  
Sbjct: 83   STNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT 142

Query: 458  GAPVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISP 637
            G P+I      G  + + V      Y+ IF+ N++A     +  L + G   GG ++ SP
Sbjct: 143  GRPLIGINDGAGARIQEGVVS-LGLYSRIFRNNILASGVIPQISL-IMGAAAGGHVY-SP 199

Query: 638  CINPILLLWVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDA 817
             +   +++ V  +S +FITGPDV+K+VT E+VT EELGGA TH   SG AH A   + DA
Sbjct: 200  ALTDFVIM-VDQTSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDA 258

Query: 818  LMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPSL-------DTIVPLESTAAYNMLDVI 976
               +RE  ++LP +N   +P   +  P   +  +L       DT++P      Y+M +VI
Sbjct: 259  FDYVRELLSYLPPNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVI 318

Query: 977  YGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRF 1156
              ++D+ EF EI   YA+NI++GFGR+ GR VGI+ NQP   AGCLDINAS K ARFVR 
Sbjct: 319  TRLLDD-EFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRT 377

Query: 1157 CDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYD 1336
            CD FNIP++  VDVPGFLPGT QEY GIIR GAKLLYAY EATVPKIT+ITRKAYGGAY 
Sbjct: 378  CDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYC 437

Query: 1337 VMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSE-----------QLTKEAEYVD 1483
            VM SK +  D+N AWPTA++AVMGA GAV  ++R   +E           +L  + EY D
Sbjct: 438  VMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYED 497

Query: 1484 KFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 1636
               NP+ AA RG+VD +I P  TR  I   L LL+ K    P KKHGN+PL
Sbjct: 498  TLVNPYVAAERGYVDAVIPPSHTRGYIGTALRLLERKIAQLPPKKHGNVPL 548

>sp|P53002|PCCB_MYCLE Probable propionyl-CoA carboxylase beta chain 5 (PCCase)
            (Propanoyl-CoA:carbon dioxide ligase)
          Length = 549

 Score =  434 bits (1116), Expect = e-121
 Identities = 253/532 (47%), Positives = 326/532 (61%), Gaps = 20/532 (3%)
 Frame = +2

Query: 101  HTLAVK-KKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHD 277
            HT A K  ++ +   +AL   G    E  H+KGK TARERI+ L D++ FVE DA   H 
Sbjct: 23   HTTAGKLAELHKRTEEALHPVGAAAFEKVHAKGKFTARERIYALLDDDSFVELDALARHR 82

Query: 278  CSDFGMEANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLV 457
             ++FG+  NR  GD VVTGYG I GR   IFSQD TVFGGSL   + +KI KV + A+  
Sbjct: 83   STNFGLGENRPVGDGVVTGYGTIDGRDVCIFSQDVTVFGGSLGEVYGEKIVKVQELAIKT 142

Query: 458  GAPVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISP 637
            G P+I      G  + + V      Y+ IF+ N++A     +  L + G   GG ++ SP
Sbjct: 143  GRPLIGINDGAGARIQEGVVS-LGLYSRIFRNNILASGVIPQISL-IMGAAAGGHVY-SP 199

Query: 638  CINPILLLWVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDA 817
             +   +++ V  +S +FITGPDV+K+VT EDVT EELGGA TH   SG AH     + DA
Sbjct: 200  ALTDFVVM-VDQTSQMFITGPDVIKTVTGEDVTMEELGGAHTHMAKSGTAHYVASGEQDA 258

Query: 818  LMELREFFTFLPQSNRLHSPIRHSHDPP-----DRLVPS---LDTIVPLESTAAYNMLDV 973
               +R+  ++LP +N   +P R+S   P     D L      LDT++P      Y+M +V
Sbjct: 259  FDWVRDVLSYLPSNNFTDAP-RYSKPVPHGSIEDNLTAKDLELDTLIPDSPNQPYDMHEV 317

Query: 974  IYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVR 1153
            +  ++DE EF E+   YA NI++G GR+  R VGI+ NQP   AGCLDINAS K ARFVR
Sbjct: 318  VTRLLDEEEFLEVQAGYATNIVVGLGRIDDRPVGIVANQPIQFAGCLDINASEKAARFVR 377

Query: 1154 FCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAY 1333
             CD FNIP++  VDVPGFLPGT QEY GIIR GAKLL+AY EATVPKIT+ITRKAYGGAY
Sbjct: 378  VCDCFNIPIVMLVDVPGFLPGTEQEYDGIIRRGAKLLFAYGEATVPKITVITRKAYGGAY 437

Query: 1334 DVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGSGSE-----------QLTKEAEYV 1480
             VM SK++  D+N AWPTA++AVMGA GAV  ++R   ++           +L  + EY 
Sbjct: 438  CVMGSKNMGCDVNLAWPTAQIAVMGASGAVGFVYRKELAQAAKNGANVDELRLQLQQEYE 497

Query: 1481 DKFANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 1636
            D   NP+ AA RG+VD +I P  TR  I   L LL+ K    P KKHGNIPL
Sbjct: 498  DTLVNPYIAAERGYVDAVIPPSHTRGYIATALHLLERKIAHLPPKKHGNIPL 549

>sp|Q8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit (Transcarboxylase
            12S subunit)
          Length = 611

 Score =  415 bits (1066), Expect = e-115
 Identities = 233/529 (44%), Positives = 325/529 (61%), Gaps = 9/529 (1%)
 Frame = +2

Query: 77   AAPLQGSAHTLAVKKKIDETRNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEW 256
            A+ ++G    LA ++++ E       GGG +R+E QHS+GK TARER++ L D + F E 
Sbjct: 10   ASTMEGRVEQLAEQRQVIEA------GGGERRVEKQHSQGKQTARERLNNLLDPHSFDEV 63

Query: 257  DAFMEHDCSDFGMEANRFPGDSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKV 436
             AF +H  + FGM+    P D VVTG G I GRP    SQDFTV GGS     + K+ + 
Sbjct: 64   GAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVET 123

Query: 437  MDQAMLVGAPVIWT**FWGCFVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCG 616
            M+QA+L G P ++     G  + + +    +GY ++F  NV       +  + + GP  G
Sbjct: 124  MEQALLTGTPFLFFYDSGGARIQEGIDS-LSGYGKMFFANVKLSGVVPQIAI-IAGPCAG 181

Query: 617  GVLFISPCINPILLLWVKDSSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKA 796
            G  + SP +   +++  K  +++FITGP V+KSVT EDVT +ELGGA+ H  ISG  H  
Sbjct: 182  GASY-SPALTDFIIMTKK--AHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFV 238

Query: 797  FENDVDALMELREFFTFLPQSNRLHSPIRHSHDPPDRLVPS--LDTIVPLESTAAYNMLD 970
             E+D  A +  ++  +FLPQ+N   +   +   P + + P+  L  IVP++    Y++ D
Sbjct: 239  AEDDDAAELIAKKLLSFLPQNNTEEASFVN---PNNDVSPNTELRDIVPIDGKKGYDVRD 295

Query: 971  VIYGVVDESEFFEIMPTYAKNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFV 1150
            VI  +VD  ++ E+   YA N++  F R++GR+VGI+ NQP V +GCLDINAS K A FV
Sbjct: 296  VIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFV 355

Query: 1151 RFCDAFNIPLLTFVDVPGFLPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGA 1330
             FCD+FNIPL+  VDVPGFLPG  QEYGGIIRHGAK+LYAY+EATVPKIT++ RKAYGG+
Sbjct: 356  NFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGS 415

Query: 1331 YDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFR-------GSGSEQLTKEAEYVDKF 1489
            Y  M ++ L  D  YAWP+AE+AVMGA+GA  +IFR          + +  K  EY + F
Sbjct: 416  YLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAF 475

Query: 1490 ANPFPAAVRGFVDDIIEPRRTRAKICQDLDLLQHKQLINPWKKHGNIPL 1636
              P+ AA RG VDD+I+P  TR KI   L++   K+   P KK   +PL
Sbjct: 476  NTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPL 524

>sp|P54541|PCCB_BACSU Putative propionyl-CoA carboxylase beta chain (PCCase)
            (Propanoyl-CoA:carbon dioxide ligase)
          Length = 506

 Score =  408 bits (1048), Expect = e-113
 Identities = 233/509 (45%), Positives = 311/509 (61%), Gaps = 9/509 (1%)
 Frame = +2

Query: 137  RNKALLGGGIKRIEAQHSKGKLTARERIHLLCDENEFVEWDAFMEHDCSDFGMEANRFPG 316
            R +A  GGG +++  Q  KGKLTARERI  L D++ F+E   FME   S       R  G
Sbjct: 11   RKQAEEGGGREKLAQQRQKGKLTARERIIFLLDQDSFIELHPFME---SQVLTREQRMLG 67

Query: 317  DSVVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVGAPVIWT**FWGC 496
            D VVTGYG I GR  ++F+QDFTV+GG+L   HA+KIC +MD A    AP+I      G 
Sbjct: 68   DGVVTGYGTIDGRSVYVFAQDFTVYGGALGETHARKICALMDLAAKNKAPIIGLNDSGGA 127

Query: 497  FVFKRVSHHFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPCINPILLLWVKDS 676
             + + V     GY  IF RNV+      +  + L GP  GG ++ SP +   + +  + +
Sbjct: 128  RIQEGVLS-LDGYGHIFYRNVLYSGVIPQISVIL-GPCAGGAVY-SPALTDFIFM-AEQT 183

Query: 677  SYLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQ 856
              +FITGP V++ VT E V  E LGGA  H  +SG AH +   + + L  +R+  ++LP 
Sbjct: 184  GRMFITGPKVIEKVTGEQVDAESLGGAGIHNAVSGNAHFSGHTEKEVLTGVRKLLSYLPL 243

Query: 857  SNRLHSPIRHSHDPPDRLV--PSLDTIVPLESTAAYNMLDVIYGVVDESEFFEIMPTYAK 1030
            + R   P       P++    P L+ +VP ++T  Y++  VI  + D   FFEI P +AK
Sbjct: 244  NGRTTEP------KPEKEASRPLLNRLVPADTTKPYDVRKVIRELADPQSFFEIQPFFAK 297

Query: 1031 NIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGFL 1210
            NI+IGF R+  + +GI+ +QPK  AG L I+A+ K ARF+RFCDAF+IPLLT  DVPGFL
Sbjct: 298  NIVIGFARLGEKAIGIVASQPKHLAGSLTIDAADKAARFIRFCDAFDIPLLTVEDVPGFL 357

Query: 1211 PGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTA 1390
            PG  QE+ GIIRHGAKLL+AYAEATVPK+T+I RKAYGGAY  M+SK +  D+ +AWP A
Sbjct: 358  PGIQQEHNGIIRHGAKLLFAYAEATVPKVTLIIRKAYGGAYVAMNSKAIGADLVFAWPNA 417

Query: 1391 EVAVMGAKGAVQIIF----RGSGSEQLTKE---AEYVDKFANPFPAAVRGFVDDIIEPRR 1549
            E+AVMG +GA  I++    + S   Q TK    AEY  + A P+ AA  G VDDII P  
Sbjct: 418  EIAVMGPEGAASILYEKEIKASADPQKTKREKTAEYKKQNAGPYKAAACGMVDDIILPEE 477

Query: 1550 TRAKICQDLDLLQHKQLINPWKKHGNIPL 1636
            +R ++ Q   +L HK    P KKHGNIPL
Sbjct: 478  SRGRLIQAFHMLTHKTEERPKKKHGNIPL 506

>sp|Q06101|PCCB_RHOER Propionyl-CoA carboxylase beta chain (PCCase) (Propanoyl-CoA:carbon
            dioxide ligase)
          Length = 476

 Score =  243 bits (619), Expect = 2e-63
 Identities = 152/416 (36%), Positives = 225/416 (54%), Gaps = 5/416 (1%)
 Frame = +2

Query: 323  VVTGYGKIHGRPAFIFSQDFTVFGGSLSMAHAKKICKVMDQAMLVGAPVIWT**FWGCFV 502
            V+   G I G     +  D TV GG++ +   K + K +D A+   +P++      G  +
Sbjct: 43   VLAASGNIDGVRTIAYCSDATVMGGAMGVDGCKHLVKAIDTAIEEESPIVGLWHSGGARL 102

Query: 503  FKRVSH-HFAGYAEIFQRNVMAFWCHSRKYL*LWGPLCGGVLFISPCINPILLLWVKDSS 679
             + V   H  G   +F+  V A     +  + L G   GG  +  P +  ++++      
Sbjct: 103  AEGVEALHAVGL--VFEAMVRASGLIPQISVVL-GFAAGGAAY-GPALTDVVIM--APEG 156

Query: 680  YLFITGPDVVKSVTNEDVTQEELGGAKTHTTISGVAHKAFENDVDALMELREFFTFLPQS 859
             +F+TGPDVV+SVT E V    LGG  THT  SGVAH A  ++ DAL   R   + + + 
Sbjct: 157  RVFVTGPDVVRSVTGEQVDMVSLGGPDTHTKKSGVAHIAAHDEADALHRARRLVSMMCEQ 216

Query: 860  NRLHSPIRHSHDPPDRLVPSLDTIVPLESTAAYNMLDVIYGVVD----ESEFFEIMPTYA 1027
                       D        L  ++P  +  AY++  +++ ++D    ES F E+   YA
Sbjct: 217  GEFDQRAAELGDS------DLRAMMPASAKRAYDVRPIVHEMLDNVEGESSFEELQGNYA 270

Query: 1028 KNIIIGFGRMHGRTVGIIGNQPKVAAGCLDINASVKGARFVRFCDAFNIPLLTFVDVPGF 1207
            ++I+ GFGRM GRTVG+I N P +  GCL+  ++ K ARFVR C+AF +PL+  VDVPG+
Sbjct: 271  RSIVTGFGRMAGRTVGVIANNP-LRLGCLNSESAEKAARFVRLCNAFGVPLVVVVDVPGY 329

Query: 1208 LPGTVQEYGGIIRHGAKLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPT 1387
            LPG   E+ G++R GAKLL+A+AEATVP++T++TRK YGGAY  M+S+ L     +AWP 
Sbjct: 330  LPGVSMEWEGVVRRGAKLLHAFAEATVPRVTVVTRKIYGGAYIAMNSRALGATAVFAWPN 389

Query: 1388 AEVAVMGAKGAVQIIFRGSGSEQLTKEAEYVDKFANPFPAAVRGFVDDIIEPRRTR 1555
            +EVAVMGAK AV I+ + + +     E E +         A+ G VD     RR R
Sbjct: 390  SEVAVMGAKAAVGILHKRALAAAPDDEREALHDRLAAEHEAIAGGVDRRCRNRRRR 445

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,316,853
Number of Sequences: 369166
Number of extensions: 4803462
Number of successful extensions: 11962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11867
length of database: 68,354,980
effective HSP length: 116
effective length of database: 46,925,720
effective search space used: 21538905480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00073

Planaria EST Database

DrC_00073

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail